Scyliorhinus canicula (smaller spotted catshark): 119966413
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Entry
119966413 CDS
T11175
Name
(RefSeq) glial fibrillary acidic protein-like isoform X1
KO
K07606
vimentin
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Pathway
scau04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
119966413
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scau03019
]
119966413
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
scau04812
]
119966413
04147 Exosome [BR:
scau04147
]
119966413
Messenger RNA biogenesis [BR:
scau03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Factors that have mRNA localization signals
119966413
Cytoskeleton proteins [BR:
scau04812
]
Eukaryotic cytoskeleton proteins
Intermediate filaments
Intermediate filaments
Type III
119966413
Exosome [BR:
scau04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
119966413
Exosomal proteins of other cancer cells
119966413
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Filament
Filament_head
Baculo_PEP_C
DUF1780
DUF1664
DUF885
DUF4407
Motif
Other DBs
NCBI-GeneID:
119966413
NCBI-ProteinID:
XP_038653958
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Position
5:168479099..168530278
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AA seq
446 aa
AA seq
DB search
MASYHRLTLRSKSSSQSALFSPTHRSFTKSISHSSWLNKSAPGKMSANDDPLDFSLLDAV
SDEFKISRTDEKEKLIDLNNRFVSYIEKVRSVEQQNKMLNAELQELKGKGNSKIGSIYEQ
ELKKLRQEVDQISKDKTKIEVERDNLLDDVHTLKAKLRSELQQREEAESNLTDFREDVDE
ATLACADLQRKVDALQDEIIFLKKLHEEEIRNLESQEQNQQAKIELDVARPDLSSALQEA
RSQFDKLASRNISETETWYKSKISDLSQSITRNNEALRLAKQEANDNRREAQTLKCEVEA
LKGAKDFLERQKNEMEDRFSKEAAKFQETVTQFENDIQNLSEQMSYRLSEYQNLLKIKMA
LDAEIATYRKLLESEETRFSTHFSPTPTPLHLQETEFELDNQPEVHSPRRTLRLKTIEMK
DGEVVSEASHQYELQPASELTELTED
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atggcttcataccatagattgactctacggtcaaaatcaagttctcaatctgcccttttc
tcaccaactcatcgctccttcacaaaatcaatatcccactcaagttggctgaacaagagt
gctcctggaaaaatgtctgctaatgatgacccgttagacttttccctactggacgctgta
agcgacgaattcaaaatcagccgcacagatgagaaagaaaaactgattgacttgaacaat
cgctttgtcagctacatcgagaaggtgaggtctgtggagcaacaaaacaagatgcttaat
gctgaactgcaagaattgaagggcaaaggcaattccaaaattggctccatctacgaacag
gagctgaagaaactgcgccaagaagtggatcagatctctaaggataaaaccaaaattgaa
gttgaacgagacaatttgttggatgatgtccacacactcaaagccaagttgagaagtgaa
ttacaacaacgggaggaagctgaaagcaatttgacagatttcagagaggatgtggacgaa
gcgacactggcatgtgcagatctgcaacgtaaagttgatgcattgcaggatgaaattatc
ttcttaaagaaacttcatgaagaagaaattcgcaacctggagtctcaagaacaaaatcaa
caggccaagattgagctggatgtggctaggcctgacctttcttcagccctgcaagaagct
cgttctcagtttgataaacttgcctccaggaacatttctgaaactgagacttggtacaag
tccaagatttcagacctttctcaatctattactcgcaacaatgaagcccttcgcctggca
aaacaagaagcgaacgataaccgcagagaggcacagacactcaagtgtgaagttgaagca
cttaaaggcgcgaaagactttcttgagcgtcagaagaatgaaatggaggatcggtttagc
aaggaagcagccaaattccaggaaactgtcactcagtttgagaatgacatccaaaatctg
tctgaacagatgagctaccgtttgtctgaatatcagaatctactgaaaattaaaatggct
ttggatgctgagattgcaacatacaggaaattgctggagagtgaggaaaccaggttttcc
acgcatttttctccaacacctacccctttacacctgcaagaaacagaatttgaattggac
aatcaacctgaagttcattcccccagaaggacattgcgcttgaaaacgattgagatgaaa
gatggcgaagtagtcagcgaagcttcacaccaatatgaactgcagccagccagtgaactg
actgaattgactgaagattaa
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