KEGG   Scyliorhinus canicula (smaller spotted catshark): 119966494
Entry
119966494         CDS       T11175                                 
Name
(RefSeq) integrin beta-1-A-like isoform X1
  KO
K05719  integrin beta 1
Organism
scau  Scyliorhinus canicula (smaller spotted catshark)
Pathway
scau03271  Virion - Rotavirus
scau04145  Phagocytosis
scau04510  Focal adhesion
scau04512  ECM-receptor interaction
scau04514  Cell adhesion molecule (CAM) interaction
scau04517  IgSF CAM signaling
scau04518  Integrin signaling
scau04530  Tight junction
scau04810  Regulation of actin cytoskeleton
scau04820  Cytoskeleton in muscle cells
scau05100  Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:scau00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03271 Virion - Rotavirus
    119966494
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    119966494
   04514 Cell adhesion molecule (CAM) interaction
    119966494
   04517 IgSF CAM signaling
    119966494
   04518 Integrin signaling
    119966494
 09140 Cellular Processes
  09141 Transport and catabolism
   04145 Phagocytosis
    119966494
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    119966494
   04530 Tight junction
    119966494
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    119966494
   04810 Regulation of actin cytoskeleton
    119966494
 09160 Human Diseases
  09171 Infectious disease: bacterial
   05100 Bacterial invasion of epithelial cells
    119966494
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:scau04131]
    119966494
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:scau04147]
    119966494
   04515 Cell adhesion molecules [BR:scau04515]
    119966494
   04090 CD molecules [BR:scau04090]
    119966494
Membrane trafficking [BR:scau04131]
 Endocytosis
  Phagocytosis
   Integrins (complement receptors)
    119966494
Exosome [BR:scau04147]
 Exosomal proteins
  Proteins found in most exosomes
   119966494
Cell adhesion molecules [BR:scau04515]
 Integrins
  Integrin beta subunits
   119966494
CD molecules [BR:scau04090]
 Proteins
  119966494
SSDB
Motif
Pfam: Integrin_beta Integrin_b_cyt Integrin_B_tail I-EGF_1 EGF_integrin PSI_integrin EGF_2 DP
Other DBs
NCBI-GeneID: 119966494
NCBI-ProteinID: XP_038654201
LinkDB
Position
5:complement(189359441..189490101)
AA seq 799 aa
MDLKYILCTGLICCCMWYGLAQSDPSECLKANAKSCAECIQAGRNCGWCTKSGFLQQGEP
NSARCDDIESLITRGCEKDIENPKGSQQIDANKQLTGRTSGEKVELKDITQIRPQKLTLK
LRSGEPQTFPLYFKRAEDYPIDLYYLMDLSFSMKDDLENVKKLGTALQIEMGKITSDFRI
GFGSFVDKTVMPYISTTPAKRKNPCTNGEVCTSPFSYKNVLSLTNDGSKFNELVSNQTIS
GNLDSPEGGFDAIMQVAVCGERIGWRNVTRLLVFSTDAGFHFAGDGKLGGIVLPNDGNCH
LNVEGLYTMSDHFDYPSIAHLVQKLSENNIQPIFAVTEEFKGVYKALHDLIPKSEVGVLS
SNSSNVIKLILDAYHALSSEVILENSKLPEGVSINYTTFCKNNSSPEEGGRKCSGIQIGD
EVSFNISVTAKKCPNKGEKATIQIKPLGFNEKVEVNLEFVCECECHKMGIPNSPDCHQGN
GTFECGACRCNDRRIGRYCECSTDEVNSEDMDFSCRKDNASSTCNDNGDCICGECVCKKR
ENPNEIISGEYCECDNFNCDRSNGVICGGNGICKCRVCECYPGFSGNACDCSLDNSTCIS
KNGQMCNGRGTCDCGRCKCTEPKFQGSACEMCPTCPGVCIEHKDCVQCKAFQKGPKKETC
DQCDFEVKLVKKQAELPQPGEVPSIAHCKEKDEDDCWFYFSYSVNDQNVPEVHVTENPEC
PQAPDIIPIVAGVVAGIVLIGLALLLIWKLLMIIHDRREFAKFEKEKMNAKWDTHGNPIY
KSPINKFKNPNYGRKVASL
NT seq 2400 nt   +upstreamnt  +downstreamnt
atggatttgaagtacatcctttgtactggactgatatgctgctgtatgtggtatgggctt
gctcaatcagatcccagtgaatgtttaaaagccaatgcaaaatcatgtgcagaatgcata
caagctggtagaaattgtggatggtgcaccaaaagtggattcttgcaacagggagagcca
aactctgcacggtgcgatgacatagaatcattaatcacgagaggatgtgaaaaagatatt
gaaaatcccaaaggttcacaacaaatagatgctaataaacaacttactggccgtacaagt
ggtgaaaaggtagagctgaaagacattacacagattcgaccacagaagctaaccctgaaa
ttgcgatcaggagagccgcaaaccttcccactgtattttaagagagctgaagactatccc
attgatctctattatcttatggacctctctttttctatgaaggatgatttggaaaatgtg
aagaagttgggaacagctttgcaaattgaaatggggaagataacttctgatttcagaatt
ggatttggctcttttgtggataagactgtaatgccttacatcagcacaaccccagccaaa
aggaaaaatccttgtacaaatggtgaagtatgtacaagcccgttcagctacaaaaatgtc
ctatcattgaccaatgatggatcaaaattcaatgaacttgtaagcaaccaaactatttct
ggaaacctggactctccagaaggtggttttgacgccataatgcaggtggctgtctgtggg
gaaagaattggctggagaaatgtcactcgattgctcgtgttctctacagatgcaggattt
cactttgctggagatggtaaactcggtggcattgttctaccaaatgatgggaattgccat
ctcaatgtggagggtctctacaccatgagtgatcattttgattacccatccattgctcat
ttggtacagaaacttagtgaaaataatattcagcctatctttgctgtcacagaagagttc
aagggtgtgtacaaggcactccatgatctcattccaaaatctgaagtgggtgttttgtca
tcaaactccagtaatgtaatcaagctcattcttgatgcgtatcacgcgttgtcttctgag
gttatcctggagaatagcaaattgccagaaggagtttcaataaattatacaaccttttgt
aaaaacaacagttcgccagaggaaggtggcaggaagtgttcaggcattcaaattggtgat
gaggtgagcttcaacataagtgtcacagcaaagaaatgcccaaataaaggggagaaagca
actattcaaatcaaacctctgggatttaatgagaaagtagaagttaatctggagtttgtt
tgtgaatgtgagtgtcataagatgggaattccgaacagcccagactgtcaccagggtaat
ggaacatttgaatgtggagcttgcagatgtaacgacagacgtatcggtcgatattgtgaa
tgcagcactgatgaagtaaatagtgaggatatggatttttcatgtcgaaaagataatgca
tctagtacctgtaatgacaatggcgattgtatctgtggggaatgtgtctgcaaaaagagg
gaaaatcctaatgaaataatctcgggtgaatattgcgaatgtgataacttcaattgtgac
cgatccaatggagtgatttgtggaggaaatggtatttgtaagtgccgcgtgtgtgaatgt
taccccggcttttctggcaatgcctgtgattgctccttggataattcgacgtgtatttca
aagaatgggcagatgtgtaatgggagaggtacatgtgactgtggtcgctgcaaatgcact
gaacccaaattccaaggatctgcctgtgaaatgtgtccaacctgtcctggagtctgtata
gaacacaaggattgtgtacagtgtaaagcctttcaaaaaggacccaaaaaagaaacctgt
gatcagtgtgactttgaggtaaagctggtgaaaaagcaggctgagttgccacaaccaggc
gaagttccatcaattgctcattgtaaggagaaggatgaggatgactgttggttctacttt
tcctattccgttaatgaccagaatgttccagaagttcatgttactgaaaacccagaatgt
ccgcaagcgcctgacataattccaattgtagctggtgtggttgctggtattgtcttgata
ggccttgccttgttgctgatatggaaattgctgatgatcattcatgacaggagggaattt
gcaaaatttgaaaaggagaaaatgaatgccaaatgggatacacatggaaatcctatttac
aagagtcctataaacaaattcaagaatccaaattacgggcgcaaagttgcttctctctaa

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