Scyliorhinus canicula (smaller spotted catshark): 119967062
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Entry
119967062 CDS
T11175
Symbol
polr1b
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA2
KO
K03002
DNA-directed RNA polymerase I subunit RPA2 [EC:
2.7.7.6
]
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Pathway
scau03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
119967062 (polr1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
scau03021
]
119967062 (polr1b)
Enzymes [BR:
scau01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
119967062 (polr1b)
Transcription machinery [BR:
scau03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
119967062 (polr1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpa2_4
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-GeneID:
119967062
NCBI-ProteinID:
XP_038655025
LinkDB
All DBs
Position
6:complement(29459817..29507301)
Genome browser
AA seq
1139 aa
AA seq
DB search
MAGKWGSLCGEERLQPSLKNLTDPALRAQRVAPKQHQALQELVRAHVDSFDQAVSEGLAR
AVQAIPPLEFNYRNERISLSFVDASISPPMVPKGSICSDLRVYPAECRGRRSTYKGKLTA
EIGWSVNGEPKGIIKQGLGLIPVMVKSKLCNLYRLSPEDLIKHHEESEEMGGYFIINGIE
KIIRMLIMPRRNFPIAMVRPKWKTRGPNYTQYGISMHCVKDEHTAINMNLHYLDNGTVMV
NFIYQKELFFIPLCFALKAMVEFTDYQIYHELIKGKEDNSFFKSCVAQMLRMVMMEGCTT
KKQVLNYLGDRFRVKLYLAEWYTNEQAAEFLFDQCLCVHLKSNVEKFYLLCLMTRKLFAF
AKDECQEENPDSLINHEVLAPGQLYLMFLKEKMEFWLQSIKLALDKKSQKGSIQISSENL
MKVFNLVPDLSRPFEYLLATGNLRSKSGLGMLQDSGLCVVADKLNFIRYLSHFRCVHRGA
AFAKMRTTSVRKLLPESWGFLCPVHTPDGEPCGLMNHLTVICEIVTQSSSTVSLPALFCA
LGVTPVDGTPSKPYSECYPVLLDGAVVGWVEKEMGPSIADTLRNFKVLQLKKVPPWIEIV
LIPMMGKPSIYPGLYIFTTMNRMMRPVRNLDLGKEELIGTLEQLYMNIAITEADILPGVT
SHQELFPHSMLSVVANFIPYSDHNQSPRNMYQCQMGKQTMGFPLHTYPDRSDNKLYRLQT
PQSPLVRPHMYDYFNIDNYPIGTNAIVAVISYTGYDMEDAMIINKASWERGFAHGSVYKT
EMIDLDQKIKQHDGLFVFGVKLGDKRTAQKLDDDGLPFIGAVLEYGDPFYSYLNLNTGDS
SVIYYKSKESCVVDNIKVCSNDNGTAPFKRVCITMRVPRNPTIGDKFASRHGQKGILSRL
WPAEDMPFTESGMMPDILFNPHGFPSRMTIGMLIESMAGKSAAMHGLCHDATPFTFSEEN
SALEYFGKMLQAAGYNYYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTG
ARDKVTNQPLGGRNVQGGIRFGEMERDALLAHGTSFLLQDRLFNCSDRSVAHVCIKCGSL
LSPVLEKPPPSWSATRHRKYQCTLCHQSDTIEIVSVPYVFRYFIAELAAMNISIQLDVR
NT seq
3420 nt
NT seq
+upstream
nt +downstream
nt
atggctggcaaatgggggagtttgtgcggtgaggaacggcttcagccgagcctgaagaac
ctgaccgatccggcgctgagggcccagagagtggcgccgaagcagcaccaggccctgcag
gagctggtcagagctcatgtggactcgttcgaccaggcggtgagcgaagggctggcgcga
gccgtgcaggctattcctccattggagttcaattatagaaatgagcggatcagcctgtcg
tttgtggatgcttccattagtcctcccatggtgccaaaaggcagcatctgcagtgacctg
agagtctacccagcggagtgtagaggacggcgaagtacttacaagggcaagttaactgca
gagattggctggtcagtgaatggcgaaccaaaggggattattaaacaaggccttggtctg
atccctgttatggtaaaatcaaaactctgcaacctataccgcctctctcctgaagatctc
attaaacaccatgaagaatctgaggaaatgggaggatacttcataataaatgggatagag
aaaatcattcggatgttgatcatgccacgccgaaattttcctattgctatggtgagacca
aagtggaagaccagaggccctaactatacacaatacggtataagcatgcactgtgtaaag
gatgagcacactgctattaacatgaacctccactatctggacaatggcaccgtaatggtc
aacttcatctaccagaaggagctcttctttataccactttgctttgcacttaaggcgatg
gttgaattcacagactaccagatttaccatgagctgattaaaggaaaagaggacaactcc
ttcttcaagagttgtgtggcacagatgttgagaatggtgatgatggaaggatgcaccaca
aagaagcaggtgctgaattacctgggggaccgattccgtgtgaaactatatctcgcagag
tggtacacaaatgagcaagctgcagaatttctgtttgatcagtgcctctgcgtacatctg
aaatcgaacgtggagaagttttacttactctgcttgatgacccggaagctgtttgcattt
gccaaggatgaatgccaagaagagaatccagatagcttgataaatcatgaagtgttggct
cctggacagctctacttgatgtttttgaaggagaaaatggagttttggttacagtccata
aaattagcactggacaaaaagagccagaaaggatctatccagattagttctgaaaactta
atgaaagtgtttaatttagtgccagatctatcacgaccatttgagtatcttttagccaca
ggaaacctgcgctcaaaatcaggtctggggatgctgcaggattcgggtttgtgtgttgtg
gcagacaagctgaattttatccgttatctctcacacttccgctgcgtgcacagaggggct
gcttttgctaagatgagaaccacctctgtgcgcaagttgctaccagaatcctggggcttc
ctgtgtcctgtgcacactccggatggagagccctgtgggctaatgaatcacttgactgtc
atttgtgagattgtgactcagtcatcaagtactgtctcactgccagccctgttctgtgca
ctaggtgttacaccagtggatggtacacccagcaagccatattctgaatgttacccagtt
ctcctggatggtgctgttgttggctgggtagaaaaagaaatgggacctagtattgccgat
acgttacgcaactttaaagtgctccagttgaaaaaggtccctccgtggattgaaatcgtt
cttataccaatgatgggtaagcctagtatttacccaggattgtacatcttcaccaccatg
aatcgcatgatgcggcctgtcagaaacctggacttgggaaaagaggagctcattgggaca
cttgaacagttgtacatgaatattgctatcaccgaggcggatatcttgcctggagtaacc
agccatcaggaactctttccccatagcatgctgagtgtagtggctaatttcatcccatac
tctgaccataatcaaagtcccaggaacatgtaccagtgtcagatgggcaagcaaacaatg
ggttttccattacacacttacccggacagatcggataataaactctatcgccttcaaact
cctcagagtcctcttgtgcggccacacatgtatgactacttcaatatagataactatccc
atagggacaaatgcaattgtagctgtcatctcgtacactggatatgacatggaagatgct
atgattatcaacaaggcatcttgggagcgaggatttgctcatggaagtgtttataagact
gaaatgatagaccttgaccaaaagattaagcaacatgatggtctctttgtatttggggtc
aaacttggtgataagcgaacagcacagaaacttgacgatgatggactgccctttattggg
gctgtattggagtacggtgatcctttttatagttacctgaatctcaacaccggggatagt
tctgtgatatactataagagcaaggagagctgtgttgtggataacatcaaagtctgtagc
aatgataatggaactgcgccgtttaagcgtgtgtgcatcactatgagggtccctcgtaat
cccactattggagataagtttgctagtcggcatggccaaaagggcatcttgagtcgattg
tggccagcggaagacatgccgttcacagagagtggaatgatgccggacattctgttcaat
ccccacggatttccttcccgtatgaccataggaatgctgattgaaagcatggcgggtaaa
tctgccgccatgcacggtctgtgccacgatgccacaccgttcacgttctctgaggaaaac
tctgccctggaatacttcggaaagatgctgcaagctgctggttacaactactatggcacg
gaaaggctctacagtggcatcagtgggttggaactggaggcagacattttcattggggtg
gtttactaccagcgcctgcgacacatggtgtctgacaagttccaagttagaactactggg
gcgagggataaggtgacaaaccagcccctgggagggcgaaatgtccagggcggtattcga
tttggggagatggaacgtgatgccctgttggcccatggaacgtccttcttgcttcaagac
cgcctcttcaattgctctgaccgatctgtagcccatgtgtgcatcaagtgtggtagtctt
ctgtcgccagtactggaaaagcccccgccatcatggtctgccacacgtcataggaaatac
cagtgtactctctgtcaccaatcagacaccatcgaaattgtctctgtgccttatgttttc
cgatacttcatagctgaactggcagcgatgaacattagtattcaactcgatgtgagatga
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