Scyliorhinus canicula (smaller spotted catshark): 119967208
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Entry
119967208 CDS
T11175
Symbol
ddx55
Name
(RefSeq) ATP-dependent RNA helicase DDX55
KO
K14809
ATP-dependent RNA helicase DDX55/SPB4 [EC:
5.6.2.7
]
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
scau03009
]
119967208 (ddx55)
Enzymes [BR:
scau01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
119967208 (ddx55)
Ribosome biogenesis [BR:
scau03009
]
Eukaryotic type
Pre-60S particles
Helicases
119967208 (ddx55)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
ResIII
CTT_SPB4
SBF_like
Cas3-like_C_2
Helicase_C_2
Motif
Other DBs
NCBI-GeneID:
119967208
NCBI-ProteinID:
XP_038655398
LinkDB
All DBs
Position
1:complement(1949191..1991897)
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AA seq
583 aa
AA seq
DB search
MADSGVWDNVENGLHPLILQTLRELRFTHMTPVQSATIPLFMSNKDVAAEAVTGSGKTLA
FVIPILEILLKREKLKKLQVGALIITPTRELAIQIDEVLSLFTVHFPQFSQILFIGGSNP
IEDVEKFQKQGGNIVVGTPGRLVDMFRRQSDGLDLPSCVKTLEVLVLDEADRLLEMGFEA
SLNTILGYLPKQRRTGLFSATQTQDVENLVRAGLRNPVRISVKEKGMAADNTQKTPVRLR
NFYMTCRADQKFNQLVTFLRQHKQEKQLLFFSTCACVEYYGAALDTLVKNVRIMCIHGKM
KHKRNKIFTEFRQLQSGILVCTDVMARGIDIPEVDWVLQYDPASNASAFVHRCGRTARIG
HHGSALVFLLPMEMAYVNFLSINQKCPMEEMKLLKDSADVLPKLKKLAVSDRAIFEKGMK
AFVSFIQSYAKHQCSLIFRLKDLDFAALARGFGLLKLPKMPELRGKSFPGFVPENIDTNS
IRYKDKNREKQRKKMLAEQQERQQNEGKRKFVKNKPWSKQKTKRDKRKKQADKRRRDEGS
DMEEENIDELLNDTRLLKKLKRGKINEEEFEKQLMGTSELEDV
NT seq
1752 nt
NT seq
+upstream
nt +downstream
nt
atggcggactccggtgtgtgggacaatgtggagaatgggctccacccgctgattctgcag
acgctgcgggagctgcgcttcactcacatgaccccggtccagtctgcaacaatccccctg
tttatgagcaacaaggatgtagctgctgaagctgtaaccggcagtgggaaaaccttggct
tttgtcattcctattttggaaatccttttaaaacgggagaagttaaagaagttgcaggtt
ggggcactgattatcactccgacacgcgagctcgctattcagattgacgaggtgctgagc
ctcttcacggttcacttcccacagttcagccagatcctgttcatcggcgggagcaatccg
atagaggatgttgagaaattccagaagcagggagggaacatcgttgtgggcactccgggc
cggttagtcgacatgttcaggcggcagtctgatggcctggatttacccagctgtgtgaag
actttggaagtcttggtgctggatgaagcggacaggcttctggagatgggatttgaagcc
agcctgaacactatcctgggatatttgccaaaacagcggagaacaggtctcttctcagcc
acacagacacaagatgtggagaacctggtccgtgcaggtctccgtaaccctgttcggatc
agtgtcaaggagaagggaatggcggcagacaatacacaaaaaacaccagtccgactgcgc
aacttttacatgacatgtcgagcggatcagaagtttaaccaattagtcaccttcttgcgc
caacataaacaagagaaacagctcctcttcttcagtacctgtgcgtgtgtggaatattac
ggggctgcactagacaccttggtgaaaaatgtacgaataatgtgtattcatggaaaaatg
aaacacaaacggaacaagatttttacagagtttcggcaacttcaaagtggtattttggtt
tgtacagatgtcatggctcgtggtatagacatccctgaggttgactgggttctgcagtac
gaccctgccagcaatgccagtgcctttgtccatcgctgcggacggacagctcgcattggt
caccatggcagcgcccttgtattcctgcttccgatggagatggcttatgtcaactttctt
tccattaatcagaaatgtccaatggaagagatgaaactgctgaaagattctgctgatgtc
ctgccgaaactgaagaagttggccgtgtctgaccgagccatctttgaaaaggggatgaag
gcatttgtgtctttcattcagtcctacgcaaaacaccagtgcagcttgatattccgactg
aaagatctggattttgcagccctcgccagaggctttggtttacttaaactgcccaagatg
ccggagttaagagggaaaagttttcctggttttgtccctgagaacatagacacaaactcc
atccgatacaaagacaaaaacagagagaaacagaggaagaagatgttagcagagcagcag
gagaggcagcaaaacgaagggaaaaggaaatttgtgaaaaataagccctggtcaaaacag
aaaacaaagagagacaagaggaaaaaacaagcagacaaaagaaggcgggatgagggatct
gacatggaggaggagaatatcgacgagcttctcaatgatacccgattgctgaagaaactg
aaaagggggaagatcaatgaggaggagtttgaaaagcaactgatggggacaagtgaactg
gaagatgtctga
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