Scyliorhinus canicula (smaller spotted catshark): 119967285
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Entry
119967285 CDS
T11175
Symbol
srrm1
Name
(RefSeq) serine/arginine repetitive matrix protein 1 isoform X1
KO
K13171
serine/arginine repetitive matrix protein 1
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Pathway
scau03013
Nucleocytoplasmic transport
scau03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
119967285 (srrm1)
03015 mRNA surveillance pathway
119967285 (srrm1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scau03019
]
119967285 (srrm1)
03041 Spliceosome [BR:
scau03041
]
119967285 (srrm1)
Messenger RNA biogenesis [BR:
scau03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
119967285 (srrm1)
Spliceosome [BR:
scau03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR-related proteins
119967285 (srrm1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PWI
Motif
Other DBs
NCBI-GeneID:
119967285
NCBI-ProteinID:
XP_038655544
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All DBs
Position
1:complement(127653870..127731351)
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AA seq
888 aa
AA seq
DB search
MDAGFFRGTSAEQDNRFSNKQKKLLKQLKFAECLEKKVDMNKVNLEVIKPWITQRVTEML
GFEDDVVIEFIFNHLEEKNPDAKLMQINLTGFLNGKNARMFMGELWPLLLSAQENIAGIP
SAFLEQKKEEIKQRQIEQEKLATMKKQDEEKEKKDKEDKENREKRDRSRSPKRRKSRSPS
PRRRSPARKERKHSVSKSPRRRTRSRSRSASPMSTVKKPEQLSPEPDLSLKERKESPAPE
ATSTSDILKEIKSATPEVKEILLEQPTKKEKERKERNRHRSRSRSKSKSRSRSRSHSRPR
RRPRSRSRSYSPRRRPSPRRRSPPRRRSPPRRPPPPPPPSRHRRSRSPIRRRRSPSISSS
GSSSSSSSRSRSPPKKTKRISISPPRKPRRSSPSPATPPRRRHRSPVSTTSPIHKGPRLS
SPPHMNRSRKGYTSVSPPRPAPKRKGSVKHDSVSPPPKPRRSEPSDSEDDKGGKAAGVES
VQQRRQYRKQNQQTSSESGSSSSSEDEAPKRSSAKNGEVRRRRQRSLSRSMTPPPAMRKR
HKDFSPRMPLGKRWHFPVAKRRRRSPSPPPRRRRTPSPPPRRRRSPSPLRRRSPSLPPRR
RSASPRRYSPPIQRRYTPSPPPRRRGSPSPAPKRRSSPSPSSRRRRGSPPSRSNRDVRSP
PLHKRHSPSPRPRMMRGSISPPPARRVSISPPPPQRRHMSPSPSNRPIRRVSRTPEPKKP
KKISPNPQAVRRATSSRSISRSPEPLPKKRPVASVSRSQSVSRSPTPVPPPPQNKMAKNA
SISPSPIKISDQETGGKKKKKKKDKKHKKDKKHKKHKKHKKEKAAAAAAVVEEPPVEPVE
APEKSPQPEASEPVKESESEEENLDDLEKHLREKALRSMRKAQASPPS
NT seq
2667 nt
NT seq
+upstream
nt +downstream
nt
atggacgcggggtttttccgcggaactagtgcagagcaagacaaccgtttcagcaacaaa
cagaagaaactcctaaaacagttgaaatttgcagaatgtcttgagaaaaaggtggacatg
aacaaagtgaacctggaagttatcaagccatggattactcagagagtgacagaaatgctt
gggttcgaggatgatgttgtgattgagttcatcttcaaccaccttgaagagaagaaccca
gatgcaaagctgatgcagattaacttgacggggtttttgaatgggaagaatgcaagaatg
ttcatgggggagttgtggccgttgctgttgagtgcgcaagaaaacatcgcaggaatcccc
tctgcctttctagaacagaagaaagaagaaatcaagcagagacagattgaacaggaaaaa
ctggctaccatgaagaaacaagatgaagagaaggaaaaaaaggacaaggaagacaaagaa
aatcgagaaaaaagggatcgttccagaagtccaaaaagacgcaagtcaagatccccatca
ccaaggaggcggtccccagcaagaaaggagcgaaagcattctgtctccaagtcgcctcgt
cgtaggaccagaagccggagcagaagtgcttctccgatgtctacagttaagaaaccagag
caactgtcacctgagccagatctctcacttaaagaaaggaaagaatctcctgccccagag
gcaacttcaacaagtgatatactgaaagaaattaagtctgcaacaccagaggtaaaggaa
attttattagaacaacctacaaaaaaagagaaggaaagaaaagaaaggaatcggcatcga
tcacgttcccgttcaaaatcaaagtctaggtcccgttcacggtctcattcacggccaagg
aggcgccctaggtcccgatcgaggtcatattcacctcgaagacgacccagcccaagacga
aggtctcctcctcgaaggaggagtccaccaaggcgcccaccaccaccaccacctccatct
aggcatagaaggagtagatcacctattagaaggcgccgatctccctcaatttcctcctcg
ggcagtagttcctcttcctcttccagatcaaggtcgcctccaaagaagacaaaacgcata
tcaatcagtccaccacgaaaacctcgccgatcttctccatcccctgccactccacccagg
aggcgacataggtcacctgtgtctacaacaagtccaattcataagggaccacgattgtca
tcgcctccacatatgaatcggtcaaggaaaggttacacttctgtttctcctcctagacca
gcaccaaaacggaaagggagcgtgaagcatgattctgtttcgccccctcctaaaccaaga
agatcagaaccgtcagactctgaagatgataaagggggcaaagctgcaggcgtggaatca
gtgcagcagagacgccagtatcgcaaacagaaccagcagacctcttcagagtctggatct
tcatcctcatctgaagatgaagcaccaaaacggtcaagtgcaaagaatggtgaagttcga
agaaggcgccaacgttcattatcacggagtatgaccccgcctcctgcaatgcgaaaacgg
cacaaggatttttcaccaaggatgccgcttggaaagaggtggcacttcccagtggcgaaa
aggagaaggagaagtccgtcaccaccaccaagacgccggcgaaccccgtctcctcctcct
cgacggcgcagatcaccgtctccgttgagacgcagatctccgtctctgccaccaagaagg
cgttcagcctcacctcggcgttactctcctccaattcagagaagatatactccatcacca
ccacctcgaaggaggggttccccatcaccagcaccaaagcgccggagttcaccttctccc
tcttccaggcgtaggagaggatcaccacctagtcgttccaaccgagatgttcgctcacca
ccgctacacaaacgccactcaccatccccacgaccaaggatgatgcgtgggtccattagt
ccaccgccagcacgaagagtgtcaatatcaccaccaccaccacaacggcgtcatatgtcc
ccatcccctagtaacaggcctattcgacgtgtttcgcgaaccccggaacccaaaaaacct
aagaagatctcaccaaacccacaagccgtgagaagggctacatcatccagatccatatct
agatcgccagaacctcttcccaagaaaaggccagttgcttcagtctccaggtcacagtct
gtcagcaggtcaccaacacctgttcctccgccaccacaaaacaaaatggcgaagaatgct
tcaattagtccatctcctatcaagatctctgaccaggaaactggaggaaagaagaagaaa
aagaagaaagataagaaacacaagaaggacaaaaaacacaagaaacacaagaagcataag
aaagaaaaggctgcagcagcggcagcagtagttgaagaaccaccagtagagccagttgaa
gctccagaaaagtccccccagccagaagcttcagaacccgtaaaggagtcagaaagtgaa
gaagaaaacctagacgatctagaaaaacatctccgagaaaaggctctacggtcaatgcga
aaggctcaagcttcaccaccatcatga
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