Scyliorhinus canicula (smaller spotted catshark): 119967507
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Entry
119967507 CDS
T11175
Name
(RefSeq) syndecan-1-like isoform X1
KO
K06257
syndecan 1
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Pathway
scau04512
ECM-receptor interaction
scau04514
Cell adhesion molecule (CAM) interaction
scau04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
119967507
04514 Cell adhesion molecule (CAM) interaction
119967507
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
119967507
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
scau04131
]
119967507
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
scau04090
]
119967507
00535 Proteoglycans [BR:
scau00535
]
119967507
Membrane trafficking [BR:
scau04131
]
Exocytosis
Calcium ion-dependent exocytosis
Acrosomal exocytosis proteins
119967507
CD molecules [BR:
scau04090
]
Proteins
119967507
Proteoglycans [BR:
scau00535
]
Cell surface proteoglycans
Syndecan family (transmembrane HSPG)
119967507
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Syndecan
DUF2613
Herpes_glycop
Motif
Other DBs
NCBI-GeneID:
119967507
NCBI-ProteinID:
XP_038656090
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All DBs
Position
6:complement(132899530..132960817)
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AA seq
344 aa
AA seq
DB search
MTPQFSLRFLLTMGFPFVLLAITPTKLPVGLTEYELDGSGTDTEDDDIYSGSGSGDDIRL
SYYDEQHTTYHTLPSTVPNNLHSSSRVTMAKTTSEMTTSEMGTSEMTTSEMGTSEMTTSE
MTTAQYVHIIPVHHDLPVVNTTTEAAVTRPVSATIISKDTDIPIVPKDKTVHSQPRAFGP
KHDFTEGTSASPNVHTTFPDHAVTITNDESLAVSGVVAENEMMTIAIEKSIDEDLEMGDN
DTDIYLIETVESKTSVNQNQIPDLRTSDEIPEETYSASGSFLERKELLAATVAAGFVGLV
LAVLLVVVVVYRMKKKDEGSYTLDESKQPNVAYQKPQSQEEFYA
NT seq
1035 nt
NT seq
+upstream
nt +downstream
nt
atgacgccacaattcagtctcagatttcttttgaccatgggatttcctttcgtcctgctg
gctattactccaacaaagctgcctgtaggcctgactgaatatgaactggatgggtctggc
acagatactgaagacgatgacatttattccggttctggttctggtgatgacatcaggctg
agctattacgatgaacagcatacaacttatcacacgcttccttcaacagttccaaataat
ctgcattcatcaagccgtgtgaccatggctaagaccacaagtgaaatgaccacaagcgaa
atgggcacaagtgaaatgaccacaagcgaaatgggcacaagtgaaatgaccacaagtgaa
atgaccacagcacaatatgtgcacatcataccagtgcatcatgatttgccagttgttaat
acaactactgaagccgctgtgaccagacccgtatctgccaccatcatttcaaaagacact
gatattcccattgttcctaaagacaaaactgttcattcgcagccacgtgcttttggtccc
aaacatgattttactgaagggaccagtgcgagccctaatgttcataccacatttcctgac
catgcggttactattaccaacgatgaatccttagctgtctcaggagtagttgcagaaaat
gaaatgatgaccatcgcgattgaaaaatcaattgatgaggatctggagatgggggataat
gacactgacatctacctcattgagacagtagaaagtaaaacttctgtgaatcagaatcaa
attccagatttgagaacttcagatgaaataccagaggaaacatattctgcatctgggagt
tttctggaaagaaaggaattattggcagctactgttgctgctggatttgtgggactagtg
cttgctgttctgctggtggtggtggtggtgtatcgaatgaagaaaaaggacgaaggaagt
tatacgttggatgaatccaagcagccaaatgtagcctatcaaaaaccacaaagtcaagag
gaattctatgcataa
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integrated database retrieval system
