Scyliorhinus canicula (smaller spotted catshark): 119967537
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Entry
119967537 CDS
T11175
Name
(RefSeq) flap endonuclease GEN homolog 1 isoform X1
KO
K15338
holliday junction resolvase GEN1/YEN1 [EC:3.1.-.-]
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
scau03400
]
119967537
DNA repair and recombination proteins [BR:
scau03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
119967537
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
XPG_I
Chromo_2
XPG_N
Motif
Other DBs
NCBI-GeneID:
119967537
NCBI-ProteinID:
XP_038656147
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All DBs
Position
6:complement(139832181..139875827)
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AA seq
1038 aa
AA seq
DB search
MRLSTCRSSRLGFAHAYFTVFFDGWIFEGKPSSQCPEIKAEIMGVNDLWQILEPVKEYVP
LQKLKGKTLAVDMSLWVCEAQTVKGMMGTVIKPHLRNLFFRISCLTLMDVRLVFVAEGNA
PKLKADTINKRNEARRGFPRKPRSSAVQTKRTHFKSVLKECCELLDCLGVPWVCAAGEAE
AMCAYLNEHGYVDGCITNDGDAFLYGAQIVYRNFTMSTKDSHVDCYEMSVIKSKLGLDRD
ALIGFAILLGCDYLPKGVPGVGKEQVLRLVETMNGLSLLQRFKLWKLEFEDVATHDTAVE
KKAHCSVCQHPGLAREHANKGCQLCANNKCCLLHGNDYLCPCDWHQAERKRKISLVERNI
KKKARTCEHFPFEEVIREFLISKDQLIQNVQWKRPKLLLLQNFALDKMEWPRHYTCEKVL
ILLSYHDMIERKLGKRDPCHLQPIRVVRTRIRNGIPCFEILWGKPEHYIYSNDQSEDSQN
TVSTIEDQVSFQAAYPDMTSQFHRQKAEKEEEKKKQKSKSKRKGRVAPLPDEITQLLAGI
NLQPSHKDEVAAGSEPVEKCINHETNPSNAPHWNLSTGFSAEDTQIPKEFWGKSRNQIAQ
PTVRYSAEIGKSSCESLSLTESENTLNAYALSPSTSMLVAEMHLSGIDWSQSFSTPLSEG
NLLTQAVTPEQTHLVIDKSCVPMGSISKLIEDGALKENSAESRQDPVQKNMRELFHEDAS
MLGDLYHLSLKDRILLKNSYQFLSLRQSDPNSSGTGSLSCSSGCTSDGSSPNAVVEPPLQ
GKFANNLIYFNKKGFPDYDFSETPCYQQEDPTATHHTSPLTQLGKENLMDSMEEDFGIHD
PSMYSYQPSRTDNISFKLKENKSAKPRRMKLVNGNASTVQKKSVCYKVSSSSDDSDTENS
RMIQKHGVKPRAAESTGISSCIANHSQVWTQQTQASPVIGRAGHTRIDTECIELKLVSNV
GVRKTEQNALMQKHSKAHSKFLTSQKNTSTAKTESVSSAVLPRPDLSSVPIFKQLSDDDD
SIIVISDSPIPLSERLKL
NT seq
3117 nt
NT seq
+upstream
nt +downstream
nt
atgcgcttgtccacatgccgttcctcgcggttaggttttgcgcatgcgtatttcacagtg
ttctttgacggttggatttttgaagggaaacccagcagccagtgccctgaaataaaagct
gaaatcatgggagtgaatgacttgtggcagattttagagcctgtaaaggaatatgttcca
ttacaaaagctgaaagggaaaacgttggctgtggacatgagcttatgggtttgtgaggct
caaactgtgaaaggcatgatgggaaccgtcatcaaaccacatctcagaaatttgtttttt
cgcatttcatgtctcactttgatggatgtgagacttgtctttgtggcagaaggaaatgca
ccaaagctgaaggctgatacaataaataaacggaatgaggcaaggcgtggttttcccaga
aagccaagaagctctgctgttcaaacaaaaagaacccattttaaatctgttcttaaagag
tgttgtgaattgctggattgtttgggcgtcccatgggtttgtgcagctggtgaggctgaa
gctatgtgtgcctatttaaatgaacatggatatgtcgatggttgtatcactaatgatggt
gatgctttcttgtatggagctcaaattgtgtacagaaacttcaccatgagcaccaaggac
tctcatgtggactgctatgaaatgtcggtaattaaatccaaattgggccttgaccgagat
gcactgattggttttgcaattttgcttggctgtgattacttgccaaagggagttccaggg
gttgggaaggaacaagttttgaggttggttgagacgatgaatggactgagccttcttcag
aggtttaaactctggaaacttgagtttgaggatgttgctactcatgatacagctgttgaa
aagaaagcacattgttcagtgtgccaacacccaggattagctagggagcatgcaaacaag
ggctgccaattgtgtgcaaataataagtgctgtttactgcatggaaatgactatctgtgc
ccgtgtgattggcatcaggcagagcggaagaggaaaatcagcttggtagagagaaacatc
aaaaaaaaagcaagaacttgtgagcatttcccatttgaagaggtaatcagagaatttctt
atcagtaaagaccagctaattcaaaatgttcaatggaagcgaccaaaattgcttttactt
cagaattttgccctggataaaatggagtggcctaggcactacacatgtgaaaaagtgctg
atcttactctcataccacgatatgatagaaagaaaattgggaaaaagagacccatgtcat
ttacaaccgataagagttgtcagaacaagaattcggaatgggattccatgttttgaaatt
ctgtggggaaagccagagcattacatttactcaaatgatcaatctgaagattcacagaac
actgtgtcaaccatagaagatcaagtttcctttcaggcagcatatccagacatgacttct
caatttcacaggcaaaaagcagaaaaagaggaggaaaagaagaagcaaaaaagtaaaagc
aagagaaaaggcagggtggctccgttgcctgatgaaatcactcagctacttgctggaata
aatttacaaccttcccataaagatgaagttgcagcaggaagtgaacctgttgaaaaatgc
ataaatcacgagacaaatccctccaacgcccctcattggaatctttccactggcttttct
gctgaagacactcagatccccaaagaattctggggaaaatctcgaaatcaaattgcacaa
cctacagttaggtacagtgcagaaataggaaaatctagctgtgagtctctatctcttaca
gaatcagaaaatacacttaatgcttatgccctatctccctcaacttctatgttagttgca
gagatgcatttgagtggcattgactggagtcaatcatttagtacaccactatcagagggc
aatctgttaactcaagctgtaacgcctgaacaaactcacttggtcattgataagtcctgt
gttcccatgggctctatcagtaaactgatagaagacggggcattgaaggaaaattctgca
gagtcgaggcaagatccagttcagaaaaatatgagggaattatttcatgaggatgcatcg
atgctgggtgatctctatcatttatccttaaaagaccgaattctattaaagaactcgtat
cagtttttatctctgcgtcaatcagatcctaattccagtggaaccggctccctgtcatgt
tcatctggttgtacaagtgatgggtcatctcctaatgctgttgttgagccgcctcttcaa
ggaaaatttgcaaataatttgatttattttaataaaaagggattccctgattatgacttc
tcagaaactccatgctaccaacaagaggacccaactgcaactcaccataccagcccatta
actcagttaggtaaagagaatttaatggattcaatggaggaggattttggaatacatgat
ccatctatgtattcataccaaccttcaaggacagataacatttcatttaaactgaaggaa
aataaatcagccaaaccacgcagaatgaaactagtgaatggaaatgcttcaacagttcaa
aaaaaaagcgtttgttacaaggtatcatcgtccagcgatgacagtgatactgagaattca
agaatgatacaaaagcatggtgtgaaacccagagctgcagagagcactgggatatcatcc
tgcattgcaaatcatagccaagtatggactcagcagacccaagccagtcctgtcattggt
agagcaggtcacaccaggatagacactgaatgcattgaactcaaactagtcagcaatgtt
ggtgttaggaaaactgagcaaaatgcattaatgcagaagcacagcaaagctcatagcaaa
ttcttaacatcccagaaaaatacctctactgctaaaacagagagcgtaagcagtgctgtc
ctgccaagacctgatctgagcagtgtgcccattttcaagcagctcagtgacgatgatgat
tccatcatagtaataagtgacagccccattccattgtcagaaaggctgaagctttga
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