Scyliorhinus canicula (smaller spotted catshark): 119967545
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Entry
119967545 CDS
T11175
Symbol
ddx1
Name
(RefSeq) LOW QUALITY PROTEIN: ATP-dependent RNA helicase DDX1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
scau03041
]
119967545 (ddx1)
03016 Transfer RNA biogenesis [BR:
scau03016
]
119967545 (ddx1)
Enzymes [BR:
scau01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
119967545 (ddx1)
Spliceosome [BR:
scau03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
119967545 (ddx1)
Transfer RNA biogenesis [BR:
scau03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
119967545 (ddx1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
SPRY
Helicase_C
CMS1
ResIII
PFK
Motif
Other DBs
NCBI-GeneID:
119967545
NCBI-ProteinID:
XP_038656169
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All DBs
Position
6:complement(143992280..144055553)
Genome browser
AA seq
746 aa
AA seq
DB search
MAAFSEMGVMQEIAEAVEQMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV
IQIVYETLKDYEEGKKGGKTSVKTGGAVFNKWQMNPYDRGSAFAIGADGFCCQSREVKEW
HGCRSTKGVNKGKYYYEVHCHDQGLCRIGWSTMQASLDLGTDKFSLVFGGTGKKSHCKQF
DSYGEEFTMHDTIGCYIDLDAGCIKFSKNGKDLGKAFDIPPHAKNQALFASCVLKNAELK
FNFGEEEFKFPPKDGYVALDKAVDGHVVKSHILHNGTAQVAQTKNLPNAPKALIIEPSRE
LAEQTLNNVKQFKKNVTNPKLRELLIIGGVSAKDQLAVLEQGVSGYVVGTPGRIDDLVST
GKLNLSQVRFFVLDEADGLLTSGYTDFISRMHSQIPQVTSDGKRLQVXTLXLFCSATLHS
VDVKKLSEKIMHFPTWVIXRRGSVPRPYIMLFLRVNPKTDRNWEKPGRHIRTDEVHAKDN
TRPGANSAEMWSEAIKILKGEYAARAIKEHKMESSDNFCRTKIDCDNMEQFFIQMGGGPD
KKGHQFACVCLHGDRKPNERKQNLEKFKKADVRLMICTDVAARGIDIRGIPFVINVTLPD
EKQNYVHRIGRVGRADRMGLAISLVATEKEKVWYHVCPNRGRGCYNTRLKDQGGCTIWYN
ETQLLTDIEEHLNVIIAQVEPDLKIPVDEFDGKVVYGKRRATVGGQYKGHVDALASTVQE
LAALEKEAQSSFLHFGYLPNQLFNRF
NT seq
2241 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgttttcagagatgggtgtgatgcaggaaattgccgaggctgtggagcagatg
gactggcttctcccaacagatatccaagctgagtccatccctttgattctgggtggtggt
gatgtattaatggcagcagaaactggcagtggcaagacaggagctttcagcatacctgtt
atacagattgtatacgaaacactcaaggactatgaagaaggcaagaaaggagggaaaaca
tctgtcaagactggtggtgcagtgttcaacaagtggcagatgaacccttacgatagagga
tcagcctttgctattggagctgatggcttttgctgtcagagcagggaagtaaaagaatgg
catggatgcagatccacaaagggagtgaacaagggcaaatattactatgaagtacattgc
catgaccaaggcttgtgcagaattggttggtcgaccatgcaagcttcactggatttgggc
actgacaaatttagcttggtatttggtggcactggaaagaaatcccattgcaaacaattt
gacagctatggagaggaatttacaatgcatgataccattgggtgctacattgatcttgat
gcaggatgtataaagttttccaaaaatgggaaagaccttgggaaagcctttgatattcct
ccacatgcaaagaaccaagccttatttgcctcatgtgttttaaagaatgctgagctcaaa
tttaactttggtgaagaagaattcaaattccctccaaaagatggctacgtggcactagac
aaggctgttgatggtcacgttgtaaagtcacacatactgcacaatggtactgcacaagtg
gctcaaactaagaacttaccaaatgctccgaaggcactgattattgaaccatcgagggaa
ctagctgaacaaactctcaataatgtcaagcagttcaagaaaaatgttactaatcccaaa
ctaagggagcttctgattattggtggtgtttctgcaaaagatcaactggctgttctggaa
caaggcgtaagtggatatgttgttggaactcctggaagaatagatgaccttgtttcaaca
ggaaaactgaatctgtcccaagttagattctttgtgctagacgaagcagatggattgctc
actagtggctatactgacttcatttcaagaatgcattctcagatccctcaagtaacatct
gacggcaagaggttacaggtatgaactttgtaattgttttgctctgccacgctgcattca
gttgatgttaagaagctgtcagagaagatcatgcattttccaacctgggtgatctaaagg
agaggatctgttccgagaccgtacatcatgttgttcttacgagttaatccaaaaaccgat
cggaactgggagaaacctggacgacatatccggacagatgaagttcatgcaaaagataac
accagacctggtgcaaattctgcagaaatgtggtcagaagctattaaaatacttaagggc
gaatatgcagctcgtgcaatcaaggagcacaagatggaatcaagcgataatttttgcaga
acaaagattgactgtgataacatggaacagttctttattcagatgggaggaggaccagat
aaaaaggggcatcagttcgcttgtgtctgcttgcatggtgatagaaaaccaaatgaaaga
aagcaaaacttggaaaaattcaagaaagcagatgtaagactcatgatctgtactgatgtt
gctgccagaggaattgacattcgtggaattccttttgtaattaatgtgactcttcctgac
gaaaaacaaaactatgttcatcgaattggcagagtgggcagagctgacaggatgggtctc
gccatttccttggtggcaactgagaaagaaaaggtttggtaccatgtatgtccaaatcgt
ggaagaggttgctacaataccagactgaaagaccagggtggatgtaccatatggtacaat
gaaacccagctgttgaccgacatcgaagagcacttgaatgtcatcatcgctcaagttgag
cctgacctgaaaataccagtggatgaatttgatggcaaagtagtctatggaaagagaaga
gcaacagtaggtgggcagtacaagggccatgttgacgctttggcatctacagtacaagag
ctggctgcccttgaaaaggaggctcaatcctctttcttacattttggctatcttcccaat
caactgttcaatcgcttttga
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