Scyliorhinus canicula (smaller spotted catshark): 119967891
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Entry
119967891 CDS
T11175
Name
(RefSeq) protein PAT1 homolog 1-like isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Pathway
scau03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119967891
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scau03019
]
119967891
Messenger RNA biogenesis [BR:
scau03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
119967891
mRNA degradation factors
5'-3' decay
Decapping complex
119967891
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAT1
hNIFK_binding
Motif
Other DBs
NCBI-GeneID:
119967891
NCBI-ProteinID:
XP_038656912
LinkDB
All DBs
Position
6:221196270..221262892
Genome browser
AA seq
751 aa
AA seq
DB search
MSREMFALGEGGGGGGGGADHRSLDDSPIEEDEEALREEDHDIDQFNEDTFGTGAVEDWE
EQHEGLDDHGEDLDDLLKERNLAESISKLVIDNDLEDPAIMRAIPSNPPLQAPPRLNTSM
WDGPMVFGGIGNPFLSHLEENRMLSGSKDSILPKRPALGQDEERDLSDRAPPPRSTSPII
GSPPVRTAPIGTPPKHMSYLSSQQPSILCPTPVHVRAPIHQRFSAPFNERMSPTQLLNVA
NSSLRAHHFQGGVTQMLNPLLLGTAQQQTGRMSPSHFARVPGLVGSQLTAMKANLLQSRL
GQMMPPVTGFRPYFSPATAGHLQNIRSSQSMFRADTTHLHPQHRRLLNQQLQLQNSRNQH
RGLNGSAGDRHSRGSFHEQAKKDPYGNLMTQREKEWVSKIQMMQLQSADPYLDDYYYQNY
FERLEKKQAALDLNNEGSKKERTKLITPQVAKLEHTYRPVQFEGSLGKLTVSSVNNPRKM
IDAVVTTRTDDDETKEKQVRDKRRQTLFTIERTYSLVLEVQDLEKKFLQVSEAERPAVLE
QRKSKIIQMYENLRGKQSHSTERVSDDHFVQIMCIRKGKRLAAKVLHLLSTEQAANVVLA
TARNLPYLVKKDSQDEMLPCLTEPCSLLVNRLPSSALTELLQQLTGSAQSSQPGSQFPSI
LQNKFGLTLFYMILSQGERLQSSEAASELMQDNRWTELVFAVTRELLKVPQASLAKPLFV
PTNLLALFSHYVDRQTLNMLESKLQLSEKPR
NT seq
2256 nt
NT seq
+upstream
nt +downstream
nt
atgtcccgggagatgttcgccctgggagaaggaggagggggtggtggaggaggagcggac
caccggtccctcgatgacagcccaatcgaggaagatgaagaagcccttcgagaagaagac
catgatattgaccaattcaatgaggacacatttgggactggggcagtcgaggactgggag
gagcagcacgagggtctggatgaccacggggaggacctggacgacctgctgaaggaaagg
aacttggcggagagcatcagcaagctggtgattgacaacgacctggaggaccccgctatc
atgagggccataccttctaaccctccgctgcaggcacctcctcgactgaacaccagcatg
tgggatgggcccatggtgtttggagggatcggaaaccccttcctctctcacttggaggag
aaccggatgctgtctggatccaaggactctattttgcccaagaggccagccttgggccaa
gacgaagagagagacctgtcggaccgtgcaccccctccccgatctacatcccccatcatt
gggagcccccccgtgcggacggccccgatcggaacaccccccaagcacatgagctacctc
agcagccagcagccgtccatactgtgccccacccccgtccatgtgcgagctccgattcac
cagcgattctcggcccccttcaacgagaggatgtcgccgacccagctgctgaacgttgcg
aactcttcactgcgtgcccaccatttccaaggcggcgtcacccaaatgctgaatccgctt
ctacttggaacagcacagcagcagacagggaggatgtcacccagtcacttcgcccgagtg
ccgggtttggtggggagccagctgacggccatgaaagccaacctgctgcaaagcaggttg
ggacagatgatgccgcctgtcaccggtttccggccatacttcagcccagccacagcaggc
cacctgcagaatatcaggtcttcccagtccatgttccgagcggacaccacccaccttcac
ccccagcatcgtcgcctcctcaaccaacaactgcagctgcagaactccaggaaccaacac
cgagggctgaatgggtctgcaggagacaggcacagcaggggcagttttcatgagcaagcc
aagaaggacccttacggcaacctgatgacccagcgggagaaggagtgggtcagcaagatc
caaatgatgcagctacagagcgcagacccctacttggatgattactactatcagaactac
tttgagagattagagaagaagcaggcagctctggatctgaacaacgaggggtccaagaaa
gagcggacaaagctgatcacaccgcaagttgcgaaactggagcatacctaccggccagtg
cagttcgaggggtccttgggtaaactgaccgtatccagcgtgaacaatcctcgcaagatg
attgacgctgtggtgacaacacgcacagatgatgatgagacaaaagagaaacaagtgcgg
gacaagaggcggcaaacactcttcaccattgaacggacgtacagtttggtgctggaggtg
caggacttggagaagaagttcctgcaagtgagtgaggcggagcggccagccgtgttggag
caaaggaaatccaagatcattcagatgtacgagaatctgcgagggaagcagtctcacagc
accgagagagtcagcgacgaccactttgtacagatcatgtgtatacgcaagggaaaacga
ctggccgccaaggtcctgcacctcctcagcacggagcaggctgccaacgtggtgctggcg
actgcccggaacctcccctacctggtcaagaaggacagtcaggatgagatgcttccctgc
ctgactgagccctgctccctgctggtcaatcgcctcccgtccagcgccctgaccgagctc
cttcagcagctgaccggctcagctcaatccagccaacccgggagccagtttccatccatc
ctacagaacaagtttggactgactttgttctacatgatcctgagccaaggggagaggttg
cagagctccgaggcagccagcgaacttatgcaggacaatagatggacggagctggtgttt
gctgtgacccgggagctgctgaaggttccacaggcatctctggccaaacctttgtttgtg
cccacgaacctcctggcgctgttctcccactatgtcgacaggcagacactgaatatgctg
gagtccaagttacagctctccgagaagccacggtag
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