Scyliorhinus canicula (smaller spotted catshark): 119968950
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Entry
119968950 CDS
T11175
Symbol
col9a2
Name
(RefSeq) collagen alpha-2(IX) chain isoform X1
KO
K08131
collagen type IX alpha
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Pathway
scau04510
Focal adhesion
scau04512
ECM-receptor interaction
scau04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
119968950 (col9a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
119968950 (col9a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
119968950 (col9a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
scau00535
]
119968950 (col9a2)
Proteoglycans [BR:
scau00535
]
Extracellular matrix (ECM) proteoglycans
Others
119968950 (col9a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
119968950
NCBI-ProteinID:
XP_038657916
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All DBs
Position
1:complement(163373802..163576326)
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AA seq
690 aa
AA seq
DB search
MASLNGVWPHPGLLQLTVLLQVICLCLTQGPIGEQHVVGSPGPAGIPGSDGIDGERGPAG
YPGPTGAKGDPGDSGPDGPQGDPGYDGLEGPKGEPGVFGKPGLEGQVGFPGAPGPPGSGT
MGPQGPPGLIGLPGEIGRPGAKGAAGRIGAIGRPGPPGQQGLPGNLHGAEGSADLLCPTS
CPPGLKGPQGLQGLKGHKGKPGYIGDSGRQGPTGIKGTVGISGEQGIPGQPGPQGLRGYP
GMMGTKGERGTRGYKGIVGPAGRTGLQGKQGPEGPLGDFGDKGDRGGRGQRGRQGLTGLK
GQNGLPGIDGKDGTPGVPGMKGVIGRAGIPGPAGSQGGAGLSGQPGQKGAAGSKGESGIR
GMTGPSGPSGQMGERGPEGEIGPPGPMGLKGDRGMAGGTGPPGPRGKAGSKGERGPTGIP
GPQGIPGFKGDKGFQGKRGPTGGIGDPGVEGLDGDKGEKGDSGEPGVTGQQGVIGEPGYR
GPSGNPGEPGAQGRVGLPGPRGPNGERGVTGATGRQGIAGRDAGDQHIVEVVLKMMQEQL
AAVAVSAKRAVLGGAGMTGPPGPPGMPGSPGEHGDHGIPGPHGLPGLQGVHGQVGNTGPK
GKHGEKGDRGEKGRGRPGLPGPPGIRGPPGMPGRSISGRDGEQGVPGMPGQPGRPGLLGP
SGIPGFCEAAACLGASAYLASGGGPDFKGP
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
atggcgagcctgaatggtgtctggccccatcctggactcctgcaactcacagtcttgctg
caagtcatctgcttgtgtttaactcagggtccaataggtgaacaacatgtggtgggttcc
ccgggtccagctgggattcctggatcggacgggatagatggggagcgtgggcccgctggg
taccctggtccaacaggagcaaaaggtgatcctggtgactctggacccgatggacctcaa
ggtgacccaggatatgatggtctagaaggtccaaaaggagagccaggggttttcggaaag
ccaggtcttgaaggtcaagttggctttcctggagctcctggaccaccgggatctggaacc
atgggaccacagggtcctcctggtttgattggtcttcctggagaaattggacgtccagga
gctaaaggtgctgcaggacgaattggagctattggccgaccaggacccccaggacaacag
ggattacctggtaacctccatggtgctgaaggaagtgcagatctcctgtgcccaacctca
tgccctccgggactaaaaggtccgcaaggacttcagggactcaaaggacacaagggtaaa
ccggggtatattggagattccggcagacagggacctacgggtatcaaaggcacagttggc
atctccggagaacaaggcattccaggccaaccaggccctcagggtcttcgaggataccct
ggaatgatgggaacaaaaggcgaaagaggtactcgtggctataagggcatagtgggtcca
gctggtcgaacaggtcttcagggcaaacaaggtcctgaggggccccttggagattttggt
gacaaaggagacaggggagggcgagggcaaaggggacggcaaggtctcactggactcaag
ggacaaaacggattaccaggcatcgatggcaaggatggcacccctggggttcctggtatg
aagggggtaataggaagagctggaattccagggcctgctggctcccagggaggagctggt
ttatcgggacaaccaggtcagaagggagcagcaggctctaagggtgaaagtggcatccgg
ggaatgactggtccctctggcccttcaggtcaaatgggtgagcgtggacctgagggggag
atcggcccaccaggccccatgggcctgaagggtgacagaggaatggctggtggaactggt
cctccaggacctagaggcaaggctggcagtaaaggagaacgaggtcccactggaatccca
ggtcctcaaggcatccctggatttaaaggagataagggattccaaggaaaaagaggaccc
acgggtggtattggtgacccgggagtggaaggattggatggcgacaaaggtgaaaaggga
gactcaggggagcccggagtgacaggacagcaaggtgtaattggggagccaggctatcgg
ggtccatctggtaacccaggagagcccggggcacagggccgggttggattgcctggcccc
cgaggtcccaacggagagcgtggtgttaccggagcaacaggccgacaaggaatcgctggg
cgggatgctggagatcagcatattgttgaggttgtcctgaaaatgatgcaagagcagtta
gcagcagtagcagtcagtgccaagagagcagtactgggcggagctgggatgactggacct
cccggaccacctggaatgccaggatctcctggtgaacatggagaccacggcattcctgga
cctcatggcctacctggtctgcaaggtgttcatggccaggtcggaaatactggaccaaaa
ggtaaacatggggagaaaggcgaccggggcgagaaaggtcgtggccgcccaggcctcccg
ggcccaccaggcatcagaggacccccaggaatgccaggtcggagtataagtggcagggat
ggcgaacagggcgtgccaggtatgcccggacagcccgggcgccctggtctgcttggaccc
tctggtatacccggattctgtgaagctgctgcttgcttaggggcctcggcctacctggcc
tcgggcggtggaccggacttcaaggggccttga
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