Scyliorhinus canicula (smaller spotted catshark): 119969638
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Entry
119969638 CDS
T11175
Symbol
taf4a
Name
(RefSeq) transcription initiation factor TFIID subunit 4
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Pathway
scau03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
119969638 (taf4a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
scau03021
]
119969638 (taf4a)
03036 Chromosome and associated proteins [BR:
scau03036
]
119969638 (taf4a)
Transcription machinery [BR:
scau03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
119969638 (taf4a)
Coactivators
SAGA/TFTC/STAGA complex
119969638 (taf4a)
Chromosome and associated proteins [BR:
scau03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
119969638 (taf4a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
TAFH
tRNA-synt_1c
Motif
Other DBs
NCBI-GeneID:
119969638
NCBI-ProteinID:
XP_038659471
LinkDB
All DBs
Position
7:190411259..190528101
Genome browser
AA seq
1111 aa
AA seq
DB search
MAAGASDLLDDVFFSDVDEKVVSDLVGSLESQLAATGHNAAEQGGIRAQVVNNHVENTPG
MVSNNVELQTAENKMGLAGAEVSTAAKIKVEESSEGKNAQINSQNAFGGGVLPCTTAGSG
VQQSVVINNARSQAPGVEQEQSTAAAAVTGSSETSAAGSIGQGKSVVISAMATPVSNHVK
TVTSNIQTLNGNNGMAINSHNAGNATTFTCSAAATTLPAVTVVNNGPGSVVKNTINTGLP
AVSLPASSSAYTVIQTSFVSTQNVPSTVVSSQAAGPTVTLVRPPPHSGPALSIASTPNGS
STILNSTVSVTNLPAPGGTGAPHQTSLLTLNSQPSSLSSNVSLSAGGQVIKSELQPKTII
QTPQQTLSAGILTSTTGSAVTSVNNQSNTSTMVIGQTIQSGLQNVASNPGGISTQSVGTP
AGMGKGTINTVAQTLARTAAVNTGPRTTITPQVIAPRLSQPQQHQPNIQNIQIPPGMVLV
RSDSGQLMLIPQQALQQMQSQAQSQGALTSRSATPTSGPPVQISTVQAPGTQIIARQVTP
TIIKPVSQPQTTVQVTTALQRPPTVQSQIVISGATSAASIGTATTVQPGTPQRTVQTMAA
AAGGPTSQILQPTASAETMENVKKCKNFLSTLIKLASSGKQSTETAANVKELVQNLLDGK
IEAEDFTSRLYRELNSSPQPYLVPFLKRSLPALRQLTQDSQAFIQQSQQQSSTQTTTALT
AVVLGNTVQQRPVVRTTAATATVTSTLQNPVLSLAQPGQSVQAGKVVQQQQGTLVRPQVT
LTQTPMVTLRQPQNRIMLTGSSQVQLKQLQTVPVMKQTVVPGSKAGLTYSVQTSVVQKNK
LKEAAAAAASGSFRDDDDINDVASMAGVNLSEESARILATNSELVGTLTRSCKDEAFLFA
APLHRRMLEIGKKHGITEVHPDVVNFVSHATQQRLQTLVEKISEVAQQRNISYKEDDRYE
QLNDVKSQLKFFEQLDQIEKQRKDEQEREILMRAAKSRSRQEDPEQLRLKQKAKEMQQQE
LAQMRQREANLTALAAIGPRKKRKVDSPGPGIGAGAEGPSTGGTPGASGVGAARQFTRQR
ITRVNLRDLIFCLENERETSHSLMLYRAFLK
NT seq
3336 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgggggcttcagatctgttggacgatgtgttcttctcagacgtggacgagaaa
gtggtgagcgacttggtcggctccctggagtcccagttggcggctacgggccacaacgcg
gcggagcagggcggaataagggcgcaggtggtgaacaatcacgtggaaaacacacccggg
atggtgagcaataatgttgagctgcaaacagcagagaacaaaatgggactggcaggagct
gaggtttccaccgcagccaaaatcaaagtggaggagagttccgaaggaaaaaacgcacag
attaattcgcagaacgcattcggcggcggggttttgccctgcacgacggcggggagtggg
gtacagcaaagtgttgttatcaataatgcaaggtcccaggctccaggagtggaacaggag
cagagtacagcggcggcagcagtgacaggatcatcagaaacatcagctgcaggcagcatc
ggtcaagggaaatcggtggtaataagtgcaatggcaaccccagtgtccaaccatgtgaaa
actgtcacctccaacatacaaactcttaatgggaataatggaatggcgataaactctcac
aatgcaggaaatgccaccactttcacttgttcagcagctgcaactaccttgccagctgtt
acggtggtcaataatggacctggatctgttgttaaaaacacaattaatacagggttgcca
gcagtgtctttgccagcctctagttctgcctacactgttattcagacgtcttttgtcagt
acgcagaatgttccttcaactgttgtttcttcacaggcagcaggacccacagtgacattg
gtgagaccgccacctcacagtggtccagctctgtcaattgcatcaacgccgaatggtagt
agtactatattgaactcaacagttagtgtaactaacttgccagctcctggtggcaccgga
gctccacatcagacttcacttctgactttaaacagtcagccttctagtttgtcaagtaac
gtttctttgtctgctggtggacaggttatcaaatccgaattgcagcccaaaacgattata
cagacaccacaacagactctcagtgcaggaatattgacatccactactggtagtgcggtg
accagtgtaaacaatcaatcaaatacaagtactatggtaataggtcagacaatacaaagt
ggactccagaatgtggcatccaatcctggcggaatttccactcagtcagttggtacacca
gcaggaatgggcaaaggaaccattaacacagttgcccaaactctggcaaggacagcagca
gtgaacactggcccaaggacgactataacaccgcaagttatagctcctcgtctctctcag
ccccaacagcatcagccaaacattcaaaatattcagattcccccaggaatggttcttgtg
cgtagtgacagtggacagttgatgctgattcctcagcaagctctacaacagatgcagtcg
caagctcagtctcaaggggcgctcacttcacgatctgccacacctaccagtggtcctcca
gttcagatctcaactgtacaggcacctggaacacaaataattgcacgacaagtgacacct
acaatcatcaagccagtttctcagccacagacaacagtacaagtgacgactgcactgcag
cgacctccaactgtacagtctcagatcgtaataagtggagcaacatctgcagcttcgata
ggtacagcaacgacggtccaaccaggaacacctcagagaactgtacagacaatggcagca
gctgctgggggtcctacatcacaaatactgcagcctactgcatcggcggaaacaatggaa
aatgtgaagaaatgcaagaactttctgtctaccctgatcaaattagcttcaagtggtaaa
cagtcaactgaaacggctgccaatgtcaaagaactggtgcaaaatctattggatgggaaa
attgaagcagaagacttcactagccggttatatagggagctcaactcctcacctcaacct
tatcttgtgcctttcctgaagcggagtttgcccgccttgcgccaactcactcaagactcg
caagcttttattcagcaaagccaacaacaatcctcaactcagaccacaacagcattgaca
gcagtggtattaggaaacactgttcaacagcgacctgtagtgcggacaaccgctgctaca
gctacagtaactagcaccctccaaaatcctgtactaagtttagcgcaacctggacagtca
gtgcaagctggaaaggttgttcaacagcagcaaggaacgttggtcagaccgcaggtaaca
ctgacacaaacgccgatggtgacacttcggcaacctcagaaccgcatcatgctaacaggt
tcttcacaggtgcaattgaagcaacttcagaccgttcctgttatgaaacagacagtagtg
ccagggagtaaagctggtttgacgtattctgtccagacttctgttgttcagaaaaacaaa
cttaaagaagcagcagcagcagcagcaagtggttcgttcagggatgatgatgatattaat
gatgtggcatccatggctggagttaacctttctgaagaaagtgcacgcattttggcaaca
aattcagaactggtgggcactctgacgcgatcatgtaaagatgaagcattcctgttcgct
gcaccattgcacagaagaatgttagaaataggtaaaaaacatggaattactgaagttcat
cctgatgtagtaaattttgtgtcacatgccactcagcagagattacaaacacttgtagaa
aaaatatctgaagttgcacagcagagaaacatctcgtacaaggaggacgataggtatgag
cagttaaatgatgttaaatcacaactcaagttctttgaacaacttgatcaaatagaaaag
cagagaaaagatgaacaagaaagagaaattttaatgcgagccgcaaagtctcgctccaga
caagaggaccccgagcaacttaggctaaaacaaaaggccaaagagatgcaacaacaagaa
ttggctcagatgagacagagagaagctaatttaactgcattagctgccattggccccaga
aagaagcggaaggttgattcaccaggacctggaattggagctggggcagaggggcccagt
acgggtgggacaccaggtgcctctggagttggagcagcaaggcagttcacacggcaacga
ataacaagagtcaacctcagggaccttatcttctgcttagagaatgagcgtgagacaagc
cattcgctaatgctgtaccgtgcattccttaaataa
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integrated database retrieval system
