Scyliorhinus canicula (smaller spotted catshark): 119969711
Help
Entry
119969711 CDS
T11175
Symbol
rbm39a
Name
(RefSeq) LOW QUALITY PROTEIN: RNA-binding protein 39a
KO
K13091
RNA-binding protein 23/39
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
scau03041
]
119969711 (rbm39a)
Spliceosome [BR:
scau03041
]
Common components
Common spliceosomal components
General mRNP proteins
119969711 (rbm39a)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RBM39linker
RRM_MUD2_C
RRM_occluded
DUF8400
RBD_DEAH11
RRM_7
PRP38_assoc
Motif
Other DBs
NCBI-GeneID:
119969711
NCBI-ProteinID:
XP_038659639
LinkDB
All DBs
Position
7:201116240..201178258
Genome browser
AA seq
543 aa
AA seq
DB search
MWQSEKMADDLDIEALLEAPYRKEDENKSSKANGQEERSKKXEKKSRSRSHSRERKRSRS
KERRRSKERDRKRSRSRERKSSKSREHRRSRSKDRRRVERGRYRSPFLEKRLISGPKFGS
GSSSRGKIGMQPGIKISRRRSRSRSPHKKDKSPIREPIDNISPEERDARTVFCMQLAARI
RPRDLEEFFSSVGKVRDVRMISDRNSRRSKGIAYVEFVDVNSVPLAIGLTGQKLLGVPII
VQASQAEKNRAAALANNLQKGTAGPMRLYVGSLHFNITEEMLRGIFEPFGRIENIQLMMD
SETGRSKGYGFITFSDAECAKKALEQLNGFELAGRPMKVGHVTERSDSSNASSFLDSDEL
ERTGIDLGTTGRLQLMARLAEGTGLQIPPAAQQALQMSGNISLGAMAAVTDLQARIIQQT
EALNPPVTVNTPPIATQCFQLSNMFNPQSEDDPAWDKEIRDDVIEECNKHGGVIHIFVDK
NSPQGNVYVKCPTIAAAAAAVGALHGRWFAGKMITAAYVPLPTYHNLFPDSMTTNQLLTP
ARR
NT seq
1632 nt
NT seq
+upstream
nt +downstream
nt
atgtggcaatccgaaaagatggcagatgacttggatattgaagcactgctcgaggcacct
tacaggaaggaggatgagaacaaatcgagcaaagccaatggacaagaggagcgtagtaaa
aagtaagaaaagaagagccgaagtcgcagtcacagtcgtgaaagaaagagaagcagaagc
aaagagcgcaggcgcagcaaagagcgagacaggaagagaagcaggagcagagagagaaag
agcagcaagagtagagaacatcgtcgcagtcgaagcaaggaccgccggagggtagaacga
ggccgttataggagcccatttttggagaagcgacttatttctggtccaaaattcggcagt
ggtagcagcagcagagggaagattggcatgcaacccggtatcaaaataagtcgaagacgc
tcccgaagcagaagcccacataaaaaggataaaagtccaataagggagccaattgataac
atttcacctgaagaaagagatgcccgaacagtattctgcatgcagcttgcagcacgaatc
cgaccgagagacttggaggaattcttttcttcagtgggaaaggtccgagatgtaagaatg
atatcagacaggaattcaaggcgttcaaaaggaattgcttacgtggaatttgtcgatgtg
aactctgttcccctcgcaataggtttgactggacagaagctacttggtgtgccaattatt
gttcaggcttcgcaggccgagaagaaccgagctgcagccctcgctaacaaccttcagaaa
ggcactgcaggaccaatgcggctatatgtaggatctttgcacttcaatatcactgaagaa
atgttgagaggaatttttgagccctttgggagaattgaaaacattcaactaatgatggat
agtgaaacagggaggtcaaaaggctatggattcataacattttctgatgctgagtgtgca
aagaaggctctagaacagctgaatggctttgagcttgcaggtagaccaatgaaggttggc
catgttacagaacgatcggattcatccaatgctagctcattcctagacagtgatgagctg
gagaggactggtattgaccttggaacgacagggcgcctacaattgatggctaggctcgca
gaaggaacgggattgcaaattcccccagcggcacagcaagctttacagatgagtggcaat
atttcattgggcgccatggcagcagtaacagatttgcaagcaagaattatccaacagact
gaagcactgaatccccctgtgactgtaaataccccaccaatagcgacacagtgtttccag
ctctccaacatgtttaacccgcagtcggaagatgatccagcctgggacaaagaaattcga
gatgatgtaattgaagaatgcaacaaacatggaggagtaattcacatatttgtggacaaa
aattcaccccagggaaatgtctatgtgaagtgtccgactattgctgctgcagctgccgct
gttggagcattgcatggaaggtggtttgcaggcaaaatgatcactgctgcctatgtgcca
cttccaacctaccacaacctcttcccggattcaatgacgaccaaccagctgctgactcca
gcaagacgatag
DBGET
integrated database retrieval system
