Scyliorhinus canicula (smaller spotted catshark): 119969747
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Entry
119969747 CDS
T11175
Name
(RefSeq) LOW QUALITY PROTEIN: embryonic polyadenylate-binding protein-like
KO
K13126
polyadenylate-binding protein
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Pathway
scau03015
mRNA surveillance pathway
scau03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
119969747
09123 Folding, sorting and degradation
03018 RNA degradation
119969747
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scau03019
]
119969747
03041 Spliceosome [BR:
scau03041
]
119969747
Messenger RNA biogenesis [BR:
scau03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
119969747
mRNA cycle factors
Stress granule specific factors
119969747
Spliceosome [BR:
scau03041
]
Complex C
Other components
Complex C specific factors
119969747
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
119969747
NCBI-ProteinID:
XP_038659714
LinkDB
All DBs
Position
7:complement(205990796..206053286)
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AA seq
633 aa
AA seq
DB search
MNATGPGYPIASLYVGDLHHDVTEAMLYEKFSPAGPIMSIRVCRDVVTRRSLGYAYINFQ
QPADAERALDTMNFEVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDESIDNKALYDTFS
AFGNILSCKVSCDESGIRKEIRYLYTLKTREPAQAVAIETMNGMVAQXDRKVFVGHFKSH
KEREAESGYKVLEYTNIYIKNFGEDMTTTRLREIFNVFGTTLSVRVMTDERGRSRGFGFV
NFEKHKDARKAVAEMNGKEINSRVVYVGRAQKKMERQGELKRKFELMKQERINRYQGVNL
YVKNLDDGIDDECLRKEFSPYGIITSAKVMTDGGHSKGFGFVCFSAPEEATKAVTEMNGR
IVSTKPLYVALAQRKEERKAHLTNQYMQRLATMRTIPNPLLSPFQHLAHSGYFMPTVPQV
QNRTAYYATSPVTPIRPSQRWTGQPMRPPTPYQNIAPSVRGVAPRRVATAISTVRQASTQ
VPPLPPNTQRVATIGTQTAGPRTALSGPMVRVLPQYKYTAGVCNTQHPPSAQQVSEPAVH
VHGQMPLTASMLAAALPQEQKQMLGERLYPLIQGMHPMFAGKITGMLLEIDNSELLHMLE
SQESLCSKVEEAVAVLQAHQAKDTVQKKGNPAA
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
atgaatgcaactggccctggctacccgatcgcctcgctgtatgttggggacttgcaccac
gatgtcactgaagcgatgctctatgagaagttctcccctgctggacccatcatgtctatc
cgtgtgtgtcgtgatgtagtcacccgacgttccctggggtacgcttacatcaacttccag
caacctgctgatgctgagcgtgccctggatactatgaatttcgaggtgattaagggccgt
cctgtccggatcatgtggtctcagcgtgatccatccctccgcaaatccggagtgggaaac
atcttcatcaaaaacctggatgagtctattgacaacaaggctttgtacgatacattctct
gcttttggaaacattctgtcctgcaaggtaagctgtgatgagagtggaatccgaaaggag
atacggtatttgtacactttgaaaacccgggagcctgcccaagccgttgcgattgagaca
atgaacgggatggttgctcaatgagatcgaaaagtgtttgtcggtcattttaagtcccac
aaagaacgcgaggctgaatctgggtataaagttctggaatacaccaacatctacattaag
aactttggagaagacatgaccactacaaggctgagggaaatcttcaacgtgtttgggacg
acgctgagtgttcgggtgatgactgatgaaagaggtcgctccagaggattcgggttcgtc
aactttgaaaagcacaaagatgcccgcaaggcggtggctgagatgaacgggaaagagatt
aacagccgggttgtttacgttggccgagctcagaagaagatggagcgacagggtgagctg
aaacgcaaatttgagttgatgaaacaggagcggatcaatcgatatcagggagtgaatttg
tacgtgaagaatctagatgatggaattgatgacgaatgtttgaggaaggaattttctccg
tatggaataattaccagcgcaaaggtgatgacagacgggggacacagcaaaggtttcggc
tttgtctgcttctctgccccggaggaagccacgaaggcggtcaccgagatgaacgggcgg
attgtcagcactaagccgctgtatgtggccttagcccaacgcaaggaggaacgcaaagcc
catctgaccaaccagtacatgcagcgcctggccaccatgagaactatacccaatcccttg
ctcagccccttccagcacctggcacattctgggtacttcatgccaaccgtaccacaggtt
cagaaccgaactgcgtattatgccacctctccagtgaccccaatccgaccctcccaacgc
tggacaggacagcccatgcggcctccaaccccctaccagaacattgctccctccgtgaga
ggggtagcacccagaagggtggccacagccatcagcacagtgagacaggcatccacacag
gttcctccgctcccacccaacacacagagagtagccactataggaactcagacggctgga
ccgcgcactgctctgtctggacctatggtgagggtgctccctcaatataaatacacagct
ggagtctgcaacacgcagcaccctcccagcgcacagcaggtgtctgaaccggccgtccat
gttcacggccagatgccactcactgcctccatgttggctgctgccctgccgcaggaacag
aaacagatgctgggtgagcgcctgtatccactcatccaaggcatgcatccaatgttcgct
ggcaaaatcaccggtatgctgctggagattgataactctgagctcctgcacatgttggaa
tcccaagaatccctgtgctccaaggtcgaggaagctgttgctgtgcttcaagctcaccaa
gctaaagatacagtgcagaaaaaaggcaacccagctgcctga
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