KEGG   Scyliorhinus canicula (smaller spotted catshark): 119970099
Entry
119970099         CDS       T11175                                 
Symbol
smu1a
Name
(RefSeq) WD40 repeat-containing protein SMU1
  KO
K13111  WD40 repeat-containing protein SMU1
Organism
scau  Scyliorhinus canicula (smaller spotted catshark)
Brite
KEGG Orthology (KO) [BR:scau00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:scau03041]
    119970099 (smu1a)
Spliceosome [BR:scau03041]
 Complex B
  Other components
   Complex B specific factors
    119970099 (smu1a)
SSDB
Motif
Pfam: WD40 WD40_WDHD1_1st WD40_Prp19 Beta-prop_EML_2 WD40_CDC20-Fz Beta-prop_TEP1_2nd WDR55 Beta-prop_CAF1B_HIR1 EIF3I WD40_MABP1-WDR62_2nd ANAPC4_WD40 Beta-prop_EML Beta-prop_WDR90_POC16_2nd LisH_TPL Beta-prop_RIG_2nd Beta-prop_WDR75_1st NBCH_WD40 WDR90_beta-prop_4th Beta-prop_Vps41 WD40_MABP1-WDR62_1st Beta-prop_TEP1_C Beta-prop_Nup120_160 Ge1_WD40 Beta-prop_NUP159_NUP214 Beta-prop_NWD2_C Beta-prop_DCAF4 Beta-prop_IFT122_1st Beta-prop_HPS5 Beta-prop_SPT8 Beta-prop_WDR35_TULP_N Beta-prop_IFT140_1st Beta-prop_WDR75_2nd Beta-prop_WDR19_1st WD40_RFWD3 Beta-prop_SCAP Beta-prop_VPS8 Beta-prop_EIPR1 Beta-prop_IP5PC_F eIF2A Beta-prop_BBS7 DUF7165 TFIIIC_delta Beta-prop_NOL10_N VPS8_N LisH LisH_PAC1 PROPPIN LisH_WDR26 Beta-prop_ELP1_2nd zf_topless
Other DBs
NCBI-GeneID: 119970099
NCBI-ProteinID: XP_038660046
LinkDB
Position
8:complement(8143436..8164950)
AA seq 513 aa
MSIEIESADVVRLIMQYLKENNLHRTLATLQEETTVSLNTVDSIESFVADINSGHWDTVL
QAIQSLKLPDKTLIDLYEQVVLELIELRELGAARSLLRQTDPMIMLKQTQPERYIHLENL
LARSYFDPREAYPDGSSKEKRRAAIAQALAGEVSVVPPSRLMALLGQALKWQQHQGLLPP
GMTIDLFRGKAAVKDVEEEKFPTQLSRHIKFGQKSHVECARFSPDGQYLVTGSVDGFIEV
WNFTTGKIRKDLKYQAQDNFMMMDDAVLCMCFSRDTEMLATGAQDGKIKVWKIQSGQCLR
RFERAHSKGVTCLSFSKDSSQILSASFDQTIRIHGLKSGKTLKEFRGHTSFVNEVTFTQD
GHYILSASSDGSVKIWNVKTTECANTFKSLGSSAGTDITVNSVHLLPKNPEHFVVCNRSN
TVVIMNMQGQIVRSFSSGKREGGDFVCCCLSPRGEWIYCVGEDFVLYCFSTVTGKLERTL
TVHEKDVIGIAHHPHQNLIGTYSEDGLLKLWKP
NT seq 1542 nt   +upstreamnt  +downstreamnt
atgtcgatcgaaatcgaatcggcggatgttgtccgtctgatcatgcagtacttaaaggag
aacaatttgcaccggaccctggcaactttacaggaagagaccacagtgtctctaaacact
gtggacagtattgagagttttgtagcagatataaacagtggccactgggacaccgtatta
caggccatacagtcactgaagctacctgataaaactcttattgatttgtacgaacaggtg
gttttagagctgattgaacttcgggagttgggtgctgctagatctttgctacgacagact
gacccaatgattatgttaaaacagacccaaccagagagatatattcatctagagaacctg
ctagcaaggtcatactttgatccacgtgaggcgtacccagatggcagcagtaaagagaag
cgaagagcagctattgctcaggcactggcaggagaagtcagtgtggtgcccccttcgcgt
ctgatggctttgttgggtcaggcattaaagtggcagcaacaccaggggctgcttcctcca
ggtatgacaattgatttgttcagaggtaaagcggccgtgaaagatgtagaagaagagaaa
ttccccactcaactcagcaggcacatcaagtttggtcagaagtcccatgtggaatgtgct
cggttttctccagatggtcagtatcttgttactggttctgtggatggctttattgaagtt
tggaacttcaccactggcaaaattagaaaggatctgaagtaccaagcacaagataacttc
atgatgatggacgatgccgtactttgcatgtgtttcagtcgtgatactgaaatgttggct
acaggtgcacaggacggaaagattaaggtgtggaagattcagagtggtcagtgtctccgc
cgatttgaacgtgctcacagtaaaggagtaacctgcctgagtttctccaaagacagtagt
cagatcctcagtgcatcttttgatcaaacgatccggattcatggtctgaagtctggtaaa
acgctgaaggaattcagaggtcatacatcatttgttaatgaagtgacatttacacaagat
gggcattacattttgagtgcatcttcagacggcagtgtaaagatctggaacgtgaagaca
acagagtgtgcaaataccttcaagtcattgggcagctctgctggtaccgatatcacagtg
aacagcgtacacctgctaccaaagaatcctgaacattttgtcgtgtgtaaccggtcgaat
acagtagtcatcatgaacatgcaggggcagattgtgaggagctttagctctggtaaaaga
gagggaggtgactttgtgtgctgctgtctgtctccacgtggtgaatggatttactgtgtt
ggtgaagattttgtgctatactgtttcagtacagtgactggcaaactggaaagaacattg
acggttcatgaaaaagatgttattggaattgctcatcatccacaccagaacctgattgga
acctacagtgaagatggtctccttaaactctggaaaccttga

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