Scyliorhinus canicula (smaller spotted catshark): 119970139
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Entry
119970139 CDS
T11175
Symbol
chrnb5a
Name
(RefSeq) neuronal acetylcholine receptor subunit beta-4 isoform X1
KO
K04815
nicotinic acetylcholine receptor beta-4
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Pathway
scau04080
Neuroactive ligand-receptor interaction
scau04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
119970139 (chrnb5a)
04082 Neuroactive ligand signaling
119970139 (chrnb5a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
scau04040
]
119970139 (chrnb5a)
Ion channels [BR:
scau04040
]
Ligand-gated channels
Acetylcholine (nicotinic)
119970139 (chrnb5a)
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Paralog
GFIT
Motif
Pfam:
Neur_chan_memb
Neur_chan_LBD
DUF2417
DpnD_N
DUF8060
Motif
Other DBs
NCBI-GeneID:
119970139
NCBI-ProteinID:
XP_038660150
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Position
8:18043752..18207859
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AA seq
494 aa
AA seq
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MCLVNVCMSVQPLFWQLALRRDRSSLGTLPPNAEERLASYLLHADRYNKLIRPAKNSSEI
VTIAIKVSLSQLISVNEREQIMTTNAWLTQEWNDYRLRWDPGKYEGVDKLRLSSQHIWLP
EIVLYNNADGTYEVSLYTNAIVYNNGDVFWLPPAIYKSACRIEVKHFPFDQQNCTLKFRS
WTYDRTEIDLVLSSDVASRDDFTPSGEWDIVSLPGRRNEIPTDPTYVDITYDFIIKRKPL
FYTINLIIPCVLITSLAILVFYLPSDCGEKITLCISVLLALTVFLLLISKIVPPTSLDVP
LIGKYLMFTMVLVTFSIVTSVCVLNVHHRSPSTHTMPEWVKQMFLKKLPTLLFMKRPENR
SIKDRIDKKQPSADTDDKADQAEVQTCYVNKESAKKYGWRLGDMSDDQDSRKEASAKISS
SVQEAVDGVRFIAEHMKSEDDDQSIIEDWKYVAMVIDRLFLWIFVLVCVVGTLGLYLQPL
FQNHASPEIFSDAE
NT seq
1485 nt
NT seq
+upstream
nt +downstream
nt
atgtgtctggtaaatgtttgcatgagtgtacagcccctgttttggcaattagcactcaga
agagatcgcagcagtctgggtaccctaccaccaaatgcagaagagaggctagctagctac
cttttacatgcagaccggtacaataaactgatcagacctgcaaagaacagcagtgagatc
gtgaccattgccattaaagtgtccctctcacagctaataagtgtgaatgagagagaacaa
ataatgacgacaaatgcctggctgacccaggaatggaatgactatcggctaaggtgggac
ccaggaaaatatgaaggagttgataaactcagactatcttctcagcatatttggctccca
gaaatagtattgtacaacaatgctgacgggacgtatgaggtatccctctacaccaatgca
atcgtgtacaacaatggcgatgtgttctggctgccgcctgccatctacaagagtgcctgc
cgaattgaagtgaagcacttcccttttgaccagcaaaactgcacgctgaaattccgatcg
tggacatacgatcgcacggaaattgacttagtcctcagcagcgatgtcgcgagccgggac
gacttcacccccagtggggaatgggatatcgtctctcttccaggtcgaaggaatgagatt
ccaacggacccaacttacgtcgatatcacatatgatttcatcatcaagaggaagccatta
ttttacaccattaacctgatcatcccgtgcgtactgatcacttcactcgcaattctggtg
ttctacctgccctcggactgtggcgagaaaataacattgtgcatttccgttctgctggca
ttgactgtcttcttactgctcatttcaaagattgttcctccaacctccctggatgtcccc
ctgataggcaagtacctgatgtttaccatggtcctggtcaccttctcgatagttaccagc
gtctgtgtactgaacgtccaccatcggtcacccagcacccacaccatgcccgagtgggtg
aagcaaatgttcctcaaaaagctgcccacactcttattcatgaagcgccccgagaatcga
agtataaaggaccgaatcgacaagaagcagccgtcagctgacacggacgacaaggccgat
caagctgaggttcaaacgtgctacgtgaacaaagagtcagcaaagaaatatggctggcgg
ttaggcgatatgtctgacgatcaagattcgagaaaggaggcatcagcaaagatcagctcc
agtgtgcaagaggcagttgacggtgttaggttcatagcagaacatatgaagagtgaagat
gatgatcagagtatcattgaagactggaaatacgttgcgatggtaatcgaccgcctgttt
ttgtggatattcgtgcttgtgtgtgtggttggcacattgggactttatcttcaacctttg
tttcagaatcacgcctcaccagaaatcttttccgatgcagaatag
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