Scyliorhinus canicula (smaller spotted catshark): 119970285
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Entry
119970285 CDS
T11175
Symbol
pum3
Name
(RefSeq) pumilio homolog 3 isoform X1
KO
K14844
pumilio homology domain family member 6
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scau03019
]
119970285 (pum3)
03009 Ribosome biogenesis [BR:
scau03009
]
119970285 (pum3)
Messenger RNA biogenesis [BR:
scau03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Cargo complex
119970285 (pum3)
Ribosome biogenesis [BR:
scau03009
]
Eukaryotic type
Pre-60S particles
Other pre-60S particles
119970285 (pum3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPL
PUF_NOP9
aq_1850
PUF
Motif
Other DBs
NCBI-GeneID:
119970285
NCBI-ProteinID:
XP_038660589
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All DBs
Position
8:63438218..63484144
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AA seq
688 aa
AA seq
DB search
MNGLLCLMVNVVQPSIKGGTDLSFLGPVFSQFVRHIGFLELVDVNMVVEGKRFSGQGRKA
PPGKGKKFSESKHFSSGSDTRKIFKGGSEKGKSKFISQKYKKGTETTSPHKFANAAGKAN
VAKFKGKPQTGSKRKLLARNEEGTTGKKPKWNDFKKQKKELKQNRQQDKKTNYDLVIRSK
QIWETVRRKDCTKEKRAELMKEMQKLVHGNIKNIAFAHDSARVIQCYVQFGDEKQRQETF
EELKEHLVDLSKSKYGRHIVKKFLMYGNKQQVAEVIRSFKGEVKKMLRHSEASTIVEYAY
NDKAILEQRKMLTEELYGNTFMIYKSVFCPTLDKVLESYPDKREGVMGEMKEILTPMVQK
EAVIKHTLVHKAFLDFFTHCSDKMKTEMIETMREAVIYMAHTHDGSRVAMQCLWHGTPKD
RKVIVKTMKTYIEKIATGEYSHLVLLAVFDCIDDTKLVKQIILSEIISVLPNLINNKYGK
KVLVYLLSPRDPAHSVPEIIQLLQQGDGNAHSKKDTNVRQRELLEAISLRLLEYLQENAR
EMVMNKATSVIVADILGCAIGDVQPAINAIAKLAAEDLVPGGNNGELHIAEHPAGHLVLK
WLIEQDGKMKELGKPECFARTLVEHVGIEKLKTWVQVNRGAIILCCLLQSKDEDVAKEVK
KGFKSLIPKLKKMENVKGIEMLLEKMIA
NT seq
2067 nt
NT seq
+upstream
nt +downstream
nt
atgaacggcctcctgtgtcttatggttaatgttgttcagccatcaattaaaggaggcaca
gatttgagcttcctgggacccgttttctcacaatttgtcagacacattgggtttcttgag
ttggtggacgtgaacatggtggttgaaggtaaaaggttttctgggcaaggtagaaaggca
ccaccaggaaagggcaaaaagttcagtgagtctaaacatttttcatcaggttctgacacg
cgtaaaatattcaaaggtggaagtgagaaaggcaaatcaaagttcatatctcaaaagtat
aagaaagggacagaaacaactagtccacacaagtttgcaaatgctgctggaaaagcgaat
gtagcaaagtttaaaggaaaaccgcagactggaagtaaaagaaagctgttggctcgaaat
gaagaaggcacaacgggaaagaaacctaaatggaatgatttcaaaaagcaaaagaaagaa
ttaaagcaaaacagacaacaggacaagaaaaccaattatgatttagttattcgctcaaag
cagatctgggaaactgtaagaaggaaagactgtaccaaagagaagagagcagaacttatg
aaagagatgcagaagctcgtccacggaaacattaaaaatattgcttttgcacatgattcc
gctcgcgttatccagtgttatgttcagtttggggatgaaaaacaaaggcaggagactttt
gaggaattgaaagaacatttggttgacttgagcaagtccaaatatggcaggcatattgtg
aaaaaatttctcatgtatggaaacaagcaacaagttgcagaagtaatcagaagctttaaa
ggtgaagtgaaaaaaatgttacgacattcggaggcatcaacaattgtggaatatgcatac
aatgacaaagcaatattggaacagcgtaaaatgttaacagaggaactttatggaaacacg
tttatgatttacaagtctgtgttttgtccaacattggacaaagttctcgagtcttatcct
gataaacgagagggtgtgatgggggaaatgaaagagatcctcactcctatggtacagaaa
gaagcagttataaagcacacgttggtacataaagcatttttggacttcttcacacactgc
tctgataaaatgaaaacggaaatgatcgaaacaatgcgagaagcggttatctatatggct
cacacgcatgatggaagcagagtagccatgcaatgtttatggcacgggacgcccaaagac
agaaaagttattgtgaaaacaatgaaaacctacatagagaaaattgctactggtgaatat
tcccatttggttctcttggctgttttcgactgtatagatgacacaaaacttgtaaaacag
ataattctgtcggagatcatcagtgtcttacctaacttgatcaacaataaatatggcaag
aaagttttggtgtatttattaagtccaagggacccagcacatagcgtgccagaaattatt
caacttctacaacaaggtgatggcaatgctcacagtaagaaggatacaaatgttcgtcag
cgtgagttgctggaggccatctcactacgtttgctggaatatttgcaggaaaatgctcgt
gaaatggtgatgaataaggcaacaagtgtcattgtggcagatattctcggctgtgccatt
ggtgatgtgcagcctgccataaatgctatcgctaaactggctgcagaagacttagtacct
gggggcaataatggtgagctacacatagcagagcaccctgcaggccacctggttcttaaa
tggttaatagaacaagatggaaagatgaaagaacttggaaagccagaatgctttgcaaga
acattagtcgagcatgttgggattgagaagttaaagacctgggtgcaggtaaaccgtgga
gccattattctttgctgccttcttcaaagtaaagatgaagatgtagccaaggaagtaaaa
aaaggctttaagagcctcattccaaagttaaagaagatggaaaatgtgaagggcatagaa
atgttgttggagaaaatgatcgcctag
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