Scyliorhinus canicula (smaller spotted catshark): 119970398
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Entry
119970398 CDS
T11175
Symbol
rorb
Name
(RefSeq) nuclear receptor ROR-beta isoform X1
KO
K08533
RAR-related orphan receptor beta
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
scau03000
]
119970398 (rorb)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
scau03310
]
119970398 (rorb)
Transcription factors [BR:
scau03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
119970398 (rorb)
Nuclear receptors [BR:
scau03310
]
1. Thyroid hormone like
1F. RAR-related orphan receptor
119970398 (rorb)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Pentapeptide_4
OmpH
Motif
Other DBs
NCBI-GeneID:
119970398
NCBI-ProteinID:
XP_038660879
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Position
8:complement(94729817..94988489)
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AA seq
475 aa
AA seq
DB search
MCQTQQKMKTEVITQIEVIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNAAYSCPRQ
RNCLIDRTNRNRCQHCRLQKCLALGMSRDAVKFGRMSKKQRDSLYAEVQKHQQRLQEQRQ
QQSGEAEALARVYTNSISNGLTDLNNEIGGTYSNGHVIDLPKVQSEGANGYYSVDSAQPS
PDQSGIDMAGIKQIKQEPIYELTPVPNLFTYSSFTNGQLAPGVTMTEIDRIAQNIIKSHL
ETCQYTMEELQQLAWQTHTYEEIKVYQNKVREVIWQQCAIQVTHAIQYVVEFAKRITGFM
DLCQNDQILLLKSGCLEVVLVRMCRAFNPLNNTVLFEGKYGGMQTFKALGCDDLVSAVFD
FAKSLCSLQLTEEEIALFSAAVLISPDRPWLMEPRKVQKLQEKVYFALQHVIHKNHLDDD
TLAKLISRLPTLTALCNLHTDKLQAFKLLHPETANSLFPPLYKELFNPDSSAIPK
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
atgtgtcaaacacagcagaaaatgaaaactgaagttataactcaaattgaagtgatacct
tgcaaaatctgcggtgataagtcctctgggatccactatggagtcatcacttgtgaaggc
tgcaagggattctttaggaggagtcagcagaacaatgccgcttactcctgtcctcgacag
aggaactgtttaattgatcgaacaaatcggaatcgttgtcaacattgtcgtctgcagaag
tgtcttgcccttggaatgtctcgagatgctgtaaaatttggtagaatgtccaagaagcaa
cgtgacagtttatatgctgaggtccagaagcaccaacagaggctgcaagaacaacggcag
cagcaaagtggcgaggcagaagcccttgcccgtgtctatacaaacagcatcagcaacggc
ttgacagacctgaacaacgaaattggtggcacttactcaaatggacatgtaattgatctg
ccaaaagtacaatctgagggagctaatggatattacagtgtagattctgctcaaccgtca
ccagatcagtctgggatagacatggctggaatcaagcaaataaaacaagagcctatttat
gaactcacacctgtaccaaacttgtttacgtatagctcttttacaaatggtcaactggct
cctggagtaacaatgactgaaatagatcgcatcgcacaaaatattataaagtcccacttg
gagacatgtcagtatacaatggaggaacttcaacagttggcatggcagacgcacacatat
gaagaaataaaagtttaccaaaacaaggtgagggaagtcatatggcagcagtgtgcaatt
caggtcacgcacgcaattcagtatgtagtcgagtttgccaaacgcattacagggttcatg
gacttgtgtcagaacgatcaaattctccttctcaaatcaggttgtttggaggtggtgttg
gtcagaatgtgccgtgcctttaatccactgaacaacacggtactttttgaaggaaaatat
ggaggcatgcaaacattcaaagctcttgggtgtgatgatctagtcagtgctgtgtttgac
tttgcaaagagtttgtgctcccttcagctgactgaggaagaaatagctttgttttcagct
gctgttctgatatcaccagatcgaccatggttaatggaaccaagaaaagttcaaaaactc
caggaaaaggtttattttgcactacagcatgtgattcataaaaatcacctggatgacgac
acattagcaaagttgatctccaggttaccaactttaactgcactttgcaacctgcacact
gacaagctccaggcattcaagctgttgcacccagagacagccaacagcctgtttcctcct
ctctacaaggagctctttaacccagactcttcagccatccccaagtga
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