Scyliorhinus canicula (smaller spotted catshark): 119970433
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Entry
119970433 CDS
T11175
Name
(RefSeq) LOW QUALITY PROTEIN: dmX-like protein 1
KO
K24155
rabconnectin-3a
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Pathway
scau04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
119970433
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
scau04131
]
119970433
Membrane trafficking [BR:
scau04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
119970433
Endosome - Lysosome transport
Acidification regulators
Rabconnectin-3 complex
119970433
RAVE complex
119970433
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rav1p_C
WD40
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_EML_2
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
EIF3I
Beta-prop_IFT140_1st
Beta-prop_EML
Beta-prop_HPS5
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
Beta-prop_DCAF4
Beta-prop_Vps41
Beta-prop_EIPR1
Beta-prop_VPS8
Beta-prop_SCAP
NBCH_WD40
Synapsin
Motif
Other DBs
NCBI-GeneID:
119970433
NCBI-ProteinID:
XP_038660971
LinkDB
All DBs
Position
8:complement(107294925..107627205)
Genome browser
AA seq
3024 aa
AA seq
DB search
MNLHQVLTGAVNPGDSCFSVGNIGDEPFTAYASGCDIVILASDFERLQIIPGAKHGNIQV
GCVDCSMQQGKIAASYGNLICIFEPISLLNRKTKHSTQLNYQWQKSGQFALESVVHNLAW
DPQGIRLLTGSNSLQLWSNGNLEININEEETTDETDPNKAGDWRCIWESKTASPIHLLKV
SPDGEFFATVGKDDCLVKVWYNSCSWQSAVMTPVDKREGDIDFSFVYLAHPRAVTGFSWR
KTSKYMPRGLSCNVLLTCCKDXVCRLWAETLLPSDSXASGEGHISVSESAFVTNNLKRNI
SSREKLNIRPFRIGRRRSSGLVAHSGYLPHQQDAHEVHRNAPLHANSLSHFHIAASINPA
TDIPLLPSITSLSLSENEETNGPFVVHWLNNKELHFTLSMEVFLQQLRRSLEQQSPESGM
EDFGQTESKSDDEIDENSEYQKGFMQSVLSDKSTGEKTSAAVMIDHKIEVLLAEWNKNAD
MLFSIHPMDGSLLVWHVDWLDEYQPGMFRQVQVSFASRIPVAFPTGDANSLSKSIVMYAC
TKNVDLAIQQGKLKPPGLTHSTSGMLISAGQNKSSGSLKLSIFTPNVLMISKHADGSLNQ
WAVSFAEESAFSTVLGVSHKSRYCGHRFHLNDLACHSVLPLLLTTSYHNAVRTPDGGNLY
NEGRGFDSLKCGSVSRYQREIGTAVTFQDSNSIYSELILWRVDPVGPLSYSGGVSELARI
NSLHVSAFSNVAWLPTLIPSYCLGAYCNSPSACFVASDGQYLRLYQAVIDAKKLLSELSN
PEIARFVGEVFNIVSQQSTARPGCIIELDAITELYGKETQLLHVFKEDFILVNQPKKMKQ
NERQASNEIGSQQETEQPQDGFSEKFFLVVIEHKQNSRSVLHMWHLHLKSDQISIDNAAE
ISLSPPKEQNGFSSEKLHSPFFKKYQACKANLQSASRLALISKRVYSQELALPEGVEIIR
ATPSAGHLSSSSVHPACLAPYLLATSCTDGKVRFWRCKVSAHLESSAAGDGVESNLAYSW
EEWPLLIEEGLQNSSAVSVPGRPVDVSCSYTSRLAVAYKRTIPVNGHSSKHFTMHVGIFE
CESTGGSQWIHEQTIHLNDLSHTGAMLDPRISIDSNLVVYNKQESHLTNDHQMTFDAKPL
VHLDWVSKEDGSHILTIGIGSKLVMYGQVSGIIQNQTKKEAPAVFSLSLWDSAKEVSQSR
WVLLRSVDLVSSVDGSLSLPVSLSWVRDGILVVGMDCEMHVYSQWQPPDKLDPVITEAES
GSTPSIVSLAKYGSANGSNPYLYRKTLSRSVTGLAQKFGGKKIPFNWNIEMEDSGLFEAS
HDLSPTLPQYHPLQLLELMDLGKIRRSKAILSHLVKCIAGEVITVSDSETSHERRLRSLT
ISASGSTARDPLTSNKSENPDYTEIDSIPPLPLCALLAADEDISHTTFEKPNKRVNISEN
SQRHSTGRNYDELFAMSRTGTDDLDSFSVDEGNSLKVIDLSQYSLTYFGPEHARVLSSHL
LHSSLPGLTSMEQMFLMALADTMATISTDIGESRERTQGGETLDECGLRFLLAMRLHTFL
LTSLPPVYRAQLLRQGLSTCHFAWAFHSEAEEELLNMIPAMQRGDPHWSELRAMGVGWWV
RSTNILRRCMEKVAKAAFQRNNDPLEAAIFYLAMKKKAVLWGLFRSLHDKKMTEFFGKNF
SDDRWRKAALKNAFALLGKQRFEQSAAFFLLGGSLKDAIEVCLERLHDVQLALVIARLYE
SEFEVSSTYKSILIRRILGFDTKSKDFNLSLRNSDPVLRSMAYWILEDYSNSLNTLLEQG
MKENDDSSAVSECIKSTSCNPGVFNFYNYLRTHPLLLRRHFASSEKTVSHMGLTVESGLA
DKISLAERRLFFTTANAHFKAGCPMLALEVLSKMPAVTIKPKTLQHKISSYLTVNSSLEE
SKRKVLDCDCSSPIINGVESKASFDWLSNGQSSSSLSFDWSQSSLTVEEQPLELKWDSDK
EDEEEENGLSMKDINPSCSNAEKVEGERCCNFSSSAADFLSPSEDVIAAQLKFGACLKIL
TTELRTLSTGYEVDGGKLRYQLYNWLEREIIALQKTCNYNVDLEAMKDSLEGIWDEVPNH
EQAENGVIDQKKSFHQQEYLQRRRQWLLQNQPLLRMFLSYCSLHGSHGGGLASVRMELIL
LLQESQQEHSVKQTTSPLVQLASIPLLFACTASSKTVVANPRLHLSNLTHDIVHTIVEFD
SPPHPDIRNNKIYVMHTVAASLSACLYQCLCDGHSYSSSFENQFTGMVYQSFLFSKQRSN
RAASLDGTVTPNTSPDQWPGIKELIHLLNSAGDEDKPKLTVLLCEVLTAVYLSLFVHGLG
THSSNELFRLVAHPLNSKMWPAIFGGGAQVPVKNQIQSKPVSAVTPPSDRYRSHFQRKES
SSRESGASSHSPPVVGQEISVYKEKFIPPELSIWDYFIAKPFLPPAQSKSEYDSEESQSS
DDEEDAFASDVQLQEHSNPNSFSWSLMRYAMVQLVLHNLKNFYPMAGLDLSELPVCSPSC
HAILKTLQRWEQVLHRRLELFGGPPPDFISMHASEGTMSSGPAILIHKALLEPTNTPFKS
RHHTALPVKRLWQYLVKQEEVQEIFIRNIFTKKRCQNEVEADSGYPGGRARIVHKESDII
TAFAINKANRNCVAIATSHDIQELDVSAILATQIYTWVEDEFELESKGSDEFLVVHARDD
FGDLQCSTPYTPSVPGTPINMPWLGSMQTGRGASVMIKRNMNNARRMASHPTLPYYLTGA
QDGSVRMFEWGHSQQLACFRPSGNSRITRIRFNHQGNKFGIVDGDGFLSFWQTTPIALGA
TPKPYLTWQCHNKTANDFVFVSSSTLIATAGQSSDNRNICLWDTLVPQTSSLVHAFTCHD
SGATVLAYASKQQLLLSGGRKGYICIFDLRQRLLRQTFQSHDSPIKAIAVDPAEEYFITG
SAEGNMKVWSLTTHNLIHTFSNEHARQSLFRNIGTGVMQIETGPANHMFSCGADGTMKMR
ILPDRFSIGSGKLDIWQNDVRFIL
NT seq
9075 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttcaccaggtcctgactggagctgtcaatcccggggacagctgtttctcggtg
ggcaacatcggcgatgaaccgtttacggcctatgcttcagggtgtgatattgtgattttg
gccagcgattttgaaagactccaaattattcctggagccaaacatggaaatatccaagtt
gggtgtgttgattgttccatgcagcagggaaagattgctgcatcatatggaaatttaatc
tgcatttttgaacccatctcccttttaaatcggaaaactaagcattctacacagctaaat
tatcaatggcagaagagtggacaatttgcactggagtcagtggtgcataacttagcatgg
gacccacaaggaattcgtctcttgactggttcgaattctttgcagctttggtccaatgga
aatctggaaattaatattaatgaagaggaaactacagatgagacagatccaaataaagct
ggtgattggagatgcatctgggagtcgaaaactgcatctccaatccatctgttaaaagtg
tctccagatggcgaattctttgcaacagtgggaaaggatgactgtcttgtgaaagtatgg
tacaattcctgcagttggcaatcagcagtgatgacaccagtagacaagagagaaggcgat
atcgatttttcctttgtatatttagcccatcctcgagctgtgactggattttcttggcga
aagaccagcaagtacatgccaaggggtctgtcatgtaatgttctgttgacctgttgcaag
gacnatgtttgtcggttatgggcagagacattacttccgagtgatagtnntgcttctggt
gaaggccacatcagtgtttctgaatctgcctttgtaaccaacaacctcaagaggaacatc
tctagtcgtgagaagttgaacatcaggccctttcgaatagggagaagacgatcatctggt
cttgttgcacatagtggatatttacctcatcagcaagatgcgcatgaagtccataggaat
gcacccctacatgcaaattcactctctcattttcacatagcagccagcattaatccagca
acagacattccactgctgccttccatcacctcgttgagtttgagtgaaaatgaagaaact
aatggaccctttgtagtccattggctaaacaacaaggaattgcattttaccttatcaatg
gaggtctttttacagcagctacgacggagcttggagcagcaatctccagaatccggaatg
gaagattttggacaaaccgagagcaaatctgatgatgaaattgatgaaaacagtgaatat
cagaaaggatttatgcaatctgtactttcagacaaaagtactggagaaaaaacctcagca
gctgtcatgattgatcataaaattgaagtgttattagcagaatggaacaagaatgcagac
atgctcttcagtattcatcccatggatggatccttattggtgtggcatgttgactggctg
gatgagtatcaacctggaatgtttcgacaggtgcaggtttcatttgcctctagaattcct
gtggcatttccaactggtgatgcaaactctctcagcaagagtatagttatgtatgcctgc
acaaaaaatgtagacctggctattcaacaaggaaaactaaagccacccggccttacacac
tccacatctggcatgttaatctctgctggccaaaataagtcatctggtagtttaaaactg
agcatcttcacacctaatgtgctcatgatctccaaacatgcagatggatccttgaatcag
tgggctgtcagctttgcagaagagtctgcattttcaactgtccttggtgtgtctcataag
tcacgttactgtggtcatcgctttcatctcaatgatttagcatgtcattcagttttgccc
ctactgctgactacttcctaccacaatgcagtacgaacaccagatggtggaaacctgtac
aatgaaggcaggggttttgactccttaaaatgcggttcagtatcaaggtaccagagagaa
attgggacagcagttacattccaggattctaattcaatatacagtgaactaattctgtgg
cgagtagatccagtcgggccattatcgtactctggaggggtgtcagagttggccagaatc
aattccctccatgtttcagccttttcaaatgtggcttggctgccaactctaatcccaagt
tactgtctaggtgcatattgcaactctcctagtgcttgttttgtggcaagcgatggccaa
tatttgcgattataccaagctgttattgatgctaaaaagcttttaagtgaactttccaat
ccagaaatcgctagatttgttggagaggttttcaatattgtaagccagcaatcaacagca
agaccaggttgcattatagaactagatgcaattacggaactttatgggaaagagactcag
ttacttcacgtctttaaggaggattttatattagtcaatcaacccaagaaaatgaagcaa
aatgaaagacaggcttccaatgaaatcggatcacaacaggaaacagagcaaccacaggat
ggattttcagaaaaattctttttggtggtaattgagcataagcagaacagccgctcagtg
ctgcatatgtggcatttgcacttgaaatccgatcagatctctattgacaatgctgctgaa
atctctttgtcacctccaaaggaacagaatggcttctcgtctgaaaaattgcattcacct
ttcttcaaaaaataccaggcttgtaaagcaaatttacagagtgccagtagattagcactc
atctcaaaaagagtttatagccaagaattagctctgccagagggtgttgaaattattaga
gctactccctctgcagggcatctgagttcatcgtcagttcacccagcatgccttgctcca
tatcttctggcaacttcttgcacagatggaaaagtccgattctggcgatgtaaagtgtca
gcccatttagaatcttcagcagctggggatggtgtggagagtaatcttgcctattcttgg
gaagaatggcctttactgattgaagaaggacttcagaacagtagtgctgttagtgtacca
ggaaggccagtggatgtaagttgttcatacacaagccggctagcagtggcatacaaacga
acaataccagttaatggacattccagtaaacacttcacaatgcatgtgggcatatttgaa
tgtgaatcaactggaggctcacaatggattcatgaacagacaatccacttaaatgacttg
agtcacaccggtgccatgttggatccaaggatcagtatagatagtaatttagtggtttac
aataaacaggagtcacatctgaccaatgatcatcaaatgacttttgatgcaaaacctctg
gttcacttagactgggtctccaaggaggatggatcgcacatcttaactataggaattgga
tctaaactggtaatgtatggacaggtttctggaataatacaaaatcaaacaaagaaagaa
gcaccagcagttttctcgctgtctttatgggatagtgccaaagaagtatctcaatctagg
tgggtgcttctcagaagtgtggatttggtttcttcagtggatggatcattgtcattacca
gtttcactttcttgggtgcgtgatggtatcctagtggtagggatggattgtgaaatgcat
gtttattcacaatggcaaccacctgataaattggatccagtgataactgaagctgaaagt
ggcagtactccttcaatagttagtctcgcaaaatatggcagtgcaaatggttccaaccct
tacctgtacagaaaaaccctgtcaaggtcagtgactggacttgctcagaaatttggtggc
aaaaaaattccatttaattggaatattgaaatggaggactctggtctttttgaagcatct
catgatttgtctcccactctgcctcagtaccatccgttgcaacttttggagttaatggac
ttgggtaaaatcagacggtccaaagccattctgtctcatttagtcaaatgtattgcagga
gaagtaatcactgtcagcgatagtgaaactagccatgaacggcgactccgatctctgacg
attagtgcaagtggcagcacagcaagagaccccttaacttcaaataaaagtgaaaatcct
gactacacagaaatcgactctattcctcctcttcctctgtgtgcacttttagctgctgat
gaagatatttctcacaccacttttgaaaagccaaacaaacgagtgaatatcagcgagaat
agtcaacggcattcaacaggaagaaactatgatgaattatttgcaatgtccaggactggt
acagatgacctcgacagcttcagtgttgacgaaggcaatagtctgaaggttattgacctt
tcccagtacagtttaacctactttggtcctgaacatgctcgagtactgtccagtcatttg
cttcattccagtttgcctggtcttacaagtatggagcaaatgtttttaatggcactcgca
gataccatggcaactatcagcactgacataggagagagcagagagagaacacaaggtgga
gaaacacttgatgaatgtggattgaggtttctcttagccatgcggctccatacattccta
ttgacatcattacctccagtctatcgagcacaacttcttcgtcaaggtttgtctacttgt
cattttgcctgggcctttcattcagaggcagaagaagagctgctaaacatgatccctgca
atgcagagaggagatccccactggtcagagcttagagccatgggtgtgggttggtgggtg
cgcagcacaaacattcttcgtagatgtatggaaaaggttgccaaggctgcattccagaga
aataatgatcccttagaggcagctatattttatcttgcaatgaagaaaaaggctgtatta
tggggtctgttccggtctcttcacgataaaaagatgacagagttttttgggaaaaacttc
agtgatgataggtggagaaaggctgcattgaagaatgcctttgcattgttaggtaaacaa
cgatttgaacaatcagcagctttcttcctcttgggtggttccctgaaggatgcaattgag
gtttgccttgaaagacttcatgatgttcagttagcacttgtaatagcacgattatatgaa
tcggagtttgaagtgtcatccacctacaagtcaatactcatcagaaggatactgggcttt
gatacaaagagcaaagattttaacctttcccttagaaattctgaccctgttttgcggagt
atggcatattggatattggaagattactccaactctttgaacacactgttggagcagggg
atgaaggaaaatgatgattccagtgcagtatcagaatgcatcaagtctacttcatgcaac
cctggggtatttaatttctacaactatttgagaacccatcctcttttgttgcgaagacat
tttgcttcttcagagaagacagtgtcacatatgggactaactgtggaaagtgggttggca
gataagataagcttagctgaaagaagattgttctttacaactgcaaatgcacattttaaa
gctggctgtccaatgctagcccttgaagtcttgtccaagatgccagcagtcaccataaag
ccaaagactttacaacataaaataagttcttatttgactgttaattcttcattagaagaa
tctaaacgtaaagttttggattgtgattgctcctcaccaataataaatggtgtggaatct
aaagcctcgtttgattggctgtcaaatggacaatctagttcatctcttagttttgattgg
agtcaatcttctctaactgttgaagaacaaccactggaattaaaatgggatagtgataaa
gaagatgaagaggaagagaatggcctgtcaatgaaggacataaatccatcttgttctaat
gccgagaaggtggaaggagaacgctgctgtaatttctccagctctgctgctgatttttta
agtccatcggaagatgtcatagcagcacaactaaaatttggggcttgcttgaagatactt
acaacagagctgcgtaccctgtctactggatatgaggttgatggtggcaaactccgctac
caattgtacaactggcttgagagagaaattatagccttacagaaaacatgtaattacaat
gttgatctggaagctatgaaagatagtttggaaggtatatgggatgaagtacctaaccat
gagcaagcagaaaatggagtcattgaccaaaaaaagtcatttcatcagcaagaatatttg
cagcgtaggagacaatggcttctgcaaaaccagccccttctgaggatgtttcttagctat
tgtagtcttcatggatctcatggcggaggcctggcatctgttaggatggagttgattctt
cttttacaggaatcgcaacaggagcattcggtgaaacagaccactagtcctttggtgcaa
cttgcatcaataccccttctatttgcctgcactgcaagttcgaaaactgtggtggctaac
ccaagactccatctgagcaaccttactcatgacattgtgcataccattgtggaatttgat
tctcctccacatccggacatcagaaataacaagatctatgtaatgcacactgtcgcagca
tctctgtctgcttgcctctaccaatgcctttgtgatggccatagttacagttcttcattt
gaaaaccagttcactggaatggtctaccagagttttctgttttcaaagcaacgttccaac
agagcagcaagtttagatggcacagtaactcccaatacttccccagaccaatggccaggt
ataaaggaactaattcatctcctgaattctgctggagatgaggataagcccaaattgaca
gtcctactctgtgaggtgttgacagcagtttacctcagtctttttgttcatggcttggga
acacactccagcaatgagctatttcgccttgtggctcatcctcttaacagcaaaatgtgg
cctgcaatttttggtggaggagcccaagtacctgtgaagaaccaaatccaatctaagcct
gtttcagcagttactcctccctctgataggtatcgcagccatttccaacgcaaagaatct
tcgagcagagaatccggagcatcctctcacagtcctccagttgttggccaagagatttca
gtctataaggagaagttcattcctcctgaacttagtatctgggattattttatagcaaag
cccttcctgcccccagcacagagtaaaagtgaatatgattcagaagagagccagagcagt
gatgatgaggaagatgcttttgcttcagacgtacagcttcaggaacattcaaatccaaac
tcattcagctggtcactgatgcgatatgctatggtgcagctggtgcttcataatttgaag
aacttttacccaatggcagggttggatctctcagaactccctgtttgttccccatcttgc
catgcaattttaaaaactcttcaacgctgggaacaagtattacatcggcgtcttgagtta
tttggtggccctcctccagacttcatctcaatgcatgccagtgagggcacaatgtcttca
ggtcctgctattctcatccataaagcattgctggaacccaccaatacaccattcaagtca
agacaccatactgcacttcctgtaaagagactttggcaatacctcgtcaaacaggaagaa
gtgcaagagatcttcattagaaacattttcacaaaaaagagatgtcaaaatgaggtggaa
gctgattccggttaccctgggggaagggcaaggattgtccataaagaatctgacatcata
acagcatttgcaattaataaagctaatcggaactgtgttgccatagccacaagtcatgat
atccaggagttagatgtgtccgctatcctggctacccagatctacacttgggttgaagat
gagtttgaactggaatcaaaaggatcagatgagtttctggtggtgcatgctagagatgat
tttggtgatttgcagtgcagcacaccttatactcccagtgttcctggcaccccaataaat
atgccgtggctgggcagcatgcagactggccgaggggcatctgtgatgatcaagaggaat
atgaataatgccagaaggatggcttcacatccaacactaccttattatctcactggtgct
caggatggtagtgttcgaatgtttgagtggggtcactcacagcaactagcatgctttcga
ccttctggtaattccaggataaccagaatacgatttaatcatcagggtaataagtttgga
attgttgatggagatggattcctgagcttctggcaaacaactccaattgctttaggagct
acaccaaaaccatacctgacctggcagtgccataacaaaactgcaaatgattttgttttt
gttagctcatctactttaatagcaacagcaggacagtctagtgacaacaggaatatctgc
ctctgggatacacttgtgccacaaaccagtagtctcgttcatgctttcacctgtcatgat
agtggagccaccgtgttggcatatgcatcaaagcagcaacttttgttatctggtggaaga
aaaggttacatttgtatatttgatctacgtcagagactactgcgtcaaacatttcagtct
catgattcacctatcaaagcaattgctgtagatccagcagaggaatacttcattactggg
tctgccgagggtaatatgaaggtttggagtttgactacacacaatctgattcacacattc
tcaaatgaacatgctcgacagtcactcttcagaaacataggaaccggagtcatgcaaata
gagactggcccagcaaatcatatgttctcttgtggagctgatggaacaatgaagatgagg
atcctgccagatcgttttagcatagggagtgggaaattagatatctggcaaaatgatgtt
agatttatactatga
DBGET
integrated database retrieval system
