Scyliorhinus canicula (smaller spotted catshark): 119970745
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Entry
119970745 CDS
T11175
Name
(RefSeq) vimentin-like
KO
K07606
vimentin
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Pathway
scau04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
119970745
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scau03019
]
119970745
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
scau04812
]
119970745
04147 Exosome [BR:
scau04147
]
119970745
Messenger RNA biogenesis [BR:
scau03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Factors that have mRNA localization signals
119970745
Cytoskeleton proteins [BR:
scau04812
]
Eukaryotic cytoskeleton proteins
Intermediate filaments
Intermediate filaments
Type III
119970745
Exosome [BR:
scau04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
119970745
Exosomal proteins of other cancer cells
119970745
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Filament
Tropomyosin
DUF1664
AAA_13
DUF7491
EzrA
HD-CE
Fib_alpha
Phage_GP20
MAGSP
Fez1
DUF3944
Vps23_core
Tup_N
Laminin_II
BLOC1_2
PUMA_CC
DUF7310
ATG16
Motif
Other DBs
NCBI-GeneID:
119970745
NCBI-ProteinID:
XP_038661791
LinkDB
All DBs
Position
8:188331511..188339692
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AA seq
412 aa
AA seq
DB search
MRSSSYSQKTTSMNRSGRSGVRVQSPSATRYRSHSTESQIYYGSWGRAGGCLSRAIEAGT
EIRTNEKEEMQQLNSFLAGYIDKVRGLEQRNSQLREELAGLRARFKVPQGMGDEYQQQFK
ELRELIERLTHEKGVAEIETGNTEEEIDSWRLKCQEQLDLKDEAEKILREFRKDVDDATL
QKADLERSIEQLMAEMEFLRKMHEEEVADLVRQIEESNVSVELDSIRPDLGAALRSVRVQ
MEEVSAKNLREAEVWYKTKFNSLRQHATKYDDQIQGTKEEISILQQQIVDLESEIGALRS
AIQCLEGQLEDMEASHLEKVASLQDVIAQMEFQLQETKAEMARYLREYQDLLNVKLTLDA
EIATYRKLLEAEEQRLGLSNENPAVASSVTKEKKTESSTRKVETHTVRKETA
NT seq
1239 nt
NT seq
+upstream
nt +downstream
nt
atgaggagctcctcgtacagccagaagactacgtccatgaaccggtccggcaggagcgga
gtcagagtccagagcccctccgcaacccgctaccgctcccactcaaccgagtcccagatt
tactatgggtcctggggccgagcgggaggctgcttgtccagggcgattgaggccggcaca
gagatccgaaccaacgagaaggaggagatgcagcaacttaacagctttttggctggctac
atcgacaaggtgaggggcctggagcagcgcaactcccagctgagggaggagctggccggc
ctgagggcccgcttcaaggtgccccagggaatgggagatgagtaccagcagcagttcaag
gaactgagggagctgatcgagaggctgacgcacgagaaaggggtggcagagatcgagacg
ggcaacaccgaggaggagatcgactcctggaggctgaaatgccaggagcagctggaccta
aaagatgaagcagagaagatcctgagagaatttcggaaggacgtggatgatgccactttg
caaaaggccgacctggagagaagcattgagcagcttatggcagagatggaattcctgaga
aagatgcacgaggaggaggtggcggacctagtgcggcagattgaagagtccaatgtctcg
gtggagctggactcaatccgtccggatctgggggctgccttgcgttccgttcgagtgcaa
atggaagaggtttctgccaagaacctcagggaagccgaggtctggtacaagaccaagttc
aacagcctccggcagcacgccaccaagtacgacgatcagatccagggcacaaaggaggag
atcagtatcctgcagcagcagatcgtggatctggagagcgagatcggagctctgagaagt
gccatccagtgcctggagggccagctggaggatatggaggccagtcacctggagaaagta
gcgagcctgcaggacgtcatcgcccagatggaattccaactgcaggaaactaaggctgag
atggcgcgttacttacgggaataccaggacctgctcaatgtcaagctgacactggatgcc
gagatcgccacctacaggaagctgctggaagcagaggagcagaggctgggactatcaaac
gagaatcccgcagttgcttcctctgtaaccaaagagaagaaaacagaatccagcactcgc
aaagtagaaacccacacggttcgcaaagagactgcctaa
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