Scyliorhinus canicula (smaller spotted catshark): 119970938
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Entry
119970938 CDS
T11175
Symbol
gtf2h1
Name
(RefSeq) general transcription factor IIH subunit 1
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Pathway
scau03022
Basal transcription factors
scau03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
119970938 (gtf2h1)
09124 Replication and repair
03420 Nucleotide excision repair
119970938 (gtf2h1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
scau03021
]
119970938 (gtf2h1)
03400 DNA repair and recombination proteins [BR:
scau03400
]
119970938 (gtf2h1)
Transcription machinery [BR:
scau03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
119970938 (gtf2h1)
DNA repair and recombination proteins [BR:
scau03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
119970938 (gtf2h1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PH_TFIIH
Motif
Other DBs
NCBI-GeneID:
119970938
NCBI-ProteinID:
XP_038661977
LinkDB
All DBs
Position
9:complement(130054565..130187690)
Genome browser
AA seq
451 aa
AA seq
DB search
MVLLNRVKAEVDCALCEEQAGFWGSRSRFPFIAPEDVAHAEGQRLSAFWYLTSESHKLFI
MATSSEEVLLIVKKVRHKKQDGALYLMAERVAWTPEGKDRFVISHMYADIRCQKISPEGK
AKVQLQLILHTGDATIFHFTNDNSAGAAAKDRDAAKDLLQQLLPKFKKKANKELEEKNSK
NCCSQGYGTAALSSSKSNKESSNAAIIRRFNHHSAMVLAAVLRKQETQNDQNSENNSTDG
NSRDSDFFQPPVKKVKLQEAIEYEDLGEKNSKKTVALNLKKADRYFHGPTPVQSQHYASS
QDIINSVHCIQQEMANYSPSLAQVLSSNMASSAISDLSPGGVLMQGASSQAINQIMPSDV
QMELKHLYVAVAELLRHFWSCFPVNTPFLEEKVGKMMNNLERFQMTKLRPFREKLQKLYI
STNLTGHLEDMLQVAFSKFHAWQSKRMLKKT
NT seq
1356 nt
NT seq
+upstream
nt +downstream
nt
atggtgctcctcaacagagtgaaagcagaagtagactgtgccctttgtgaagaacaggca
ggtttctggggtagcagatcacgctttcccttcattgctcctgaagacgttgctcatgct
gaaggtcaaaggttgtctgccttttggtatctcacttctgaatctcacaaactgttcatc
atggccacgtcatcagaggaggttctgctaattgtgaagaaagtacggcacaaaaaacaa
gatggggccctatacctgatggccgagcgtgtagcatggacaccagaggggaaggatcgt
tttgtcattagccatatgtatgcagatatccgctgtcagaagataagtcctgaaggaaaa
gcaaaagtacagcttcagctgattttacatacaggagatgctacaatcttccatttcacc
aatgataacagtgctggtgctgcagccaaagaccgtgatgctgctaaggacttgctccaa
cagctgctcccaaagttcaagaaaaaagcaaacaaggaactggaggaaaaaaacagcaaa
aactgttgttcacagggttacggaactgcagcattgtcatcctctaaatccaacaaggag
agcagcaatgctgctataatccgtcgcttcaatcatcacagtgccatggtgctggcagcc
gtcctccgcaaacaagaaacccaaaatgatcagaacagtgagaacaacagcaccgatggt
aattcccgtgattcagattttttccagccaccagtcaagaaggtgaagttacaggaagca
atagaatatgaagacttgggagagaagaactcaaagaagacagttgcactaaatttgaag
aaggctgacagatattttcatggtccaactcctgttcagtctcaacattacgcatctagc
caggatatcattaactcggtccattgtattcaacaagaaatggctaattacagccccagt
cttgctcaggttctttccagcaatatggcaagcagtgcaattagtgacctgtcgcctggt
ggagtgctcatgcaaggagcatcttcccaagctataaaccagataatgccaagtgatgtc
cagatggaactcaaacacttgtatgtggcggtggcagagttactgagacacttctggtcc
tgctttcctgttaatacgccattccttgaggagaaggttgggaagatgatgaataacctg
gagagatttcagatgacaaaactaaggccattccgcgagaagctgcagaagctatacatc
agtacaaacttgactggtcatttagaagatatgctacaggtagccttcagtaagttccat
gcctggcagtcaaaacgaatgctgaaaaagacgtga
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