Scyliorhinus canicula (smaller spotted catshark): 119971162
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Entry
119971162 CDS
T11175
Name
(RefSeq) polycystic kidney disease protein 1-like 2
KO
K04988
polycystin 1L2
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
scau04040
]
119971162
04091 Lectins [BR:
scau04091
]
119971162
Ion channels [BR:
scau04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
119971162
Lectins [BR:
scau04091
]
C-Type lectins
Others
119971162
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Polycystin_dom
PKD_channel
REJ
PLAT
Lectin_C
SUEL_Lectin
Ion_trans
GPS
Abhydrolase_9_N
ANC1_spectrin
Motif
Other DBs
NCBI-GeneID:
119971162
NCBI-ProteinID:
XP_038662286
LinkDB
All DBs
Position
9:complement(24982255..25147196)
Genome browser
AA seq
2447 aa
AA seq
DB search
MQRSFQGAQKWCERGGGHLAFILNEETQEFVQKHLEADKDWWIGLAPWKQNLTQDETDET
LAWLDGTNVTYSKWSPEHLSSPSVACSHILQNSGYHWMSANNCKQEFYFICEFESERAFA
CDHFNATLQCQSGKVIEINSSFYGRKSLSYCSLENVAPTESEECSWVDVREKVAGQCHGL
QACQAAADKTSFGDLCPRLGNYLVIDYHCKEGLRILVDDVYSILENVTISSKWLLHPYSG
NLTCTLNTGDGFMIDPYNPLQPSSNVTHKYMTPGLFTINIECTTSEWHVTAQETVSIQQP
ISGFGIIKCCNVNQPEDTNNCTVLYGDPLWIQLEVEEGTDVTYVILAGAVTLHTFTALRG
AVPQNVTVESTAQQQIGPGIHQLTILAKNNVTTQEVSQNITVQLVEPIKDLEASVNSVVL
ELGNDLTINISVSCGAPIELQFEFIGPNETFSEAIENPDGKLGAYSIPMNSEGTFLIRGK
AVNAFSSISFNVGNITVVANTSALTRHDMDAGASSHNGMSPTESVLKREADERPEKLQAK
INGGQLEVANPFSQLVLSGRKSKSRDLDGHSEMSFQWSCGVCWPSWDTCVQSNQIDTVHQ
DLTIHPSCLPPPNSFISIRLTVSKPGTPNSTAEKCLIFTKKSKKGMNIRCEDNCNPVDSS
ENVTLTVDCQDCKNPINYKWYRVNPSKEQIKLPSACNIKQQNIAQESLTLIKENSNVLVL
GNEELVKFAPVLKLRAVGISDNGDYKYKDYIVSMMPPLPVPTCNVFPREGSTVSTTFSIK
CTVTCSSNSSCSASGLTYCFFVKPDVPLHCGSQPILPPTYLPLGDSKNENQLNITVTVRN
SAGSFTSILVTARVYEFSNIGTNKDLATLLSENIKDISGATTNNSLLIQLFESVSSILNQ
EARTGAVGELALEDKKELRETMLSNLSVVDVSSLHKAVEVSEVLKQLTHRTDELTSTSQL
EASSTLLNMGKSLLTLSAVYDDDPEKRTIAANTLFNVVSNVLEASVENDVRDDLATDTQR
VISEKLLDTINHLQSVVLNEAIADEEPVLMTMPSVSMYLQRMPADSTDENSIILPDSTAS
SFTLPAFPSLNIKDDMDTVDVRVVSFSVNPFMWTGKDEVSGAVSGLTLTSVNGTIHSVRN
LTEDIEIILPRSNVMNENRTEFKLVDNLTIIQVNVTSDSGTLLIHLEPEQSIPLLLYFNY
ESEPNETSFLVTTQLPNIKYTGAAKYTWLISPTELMYGVGTYYLSVKPAPDLNSSLPTNI
SVAFTSFMSQCVYWDEVNSNWSSSGCRVGPLTSSSSTQCLCNHLTFFSSSFFVMPNVVDV
SKTAELFATFVDNPVVVTTVACIFGLYILTVVWARRKDRQDMAKVKITLLADNDPFAQYR
YLVTVFTGHRRGAATTSKVTITLYGSEGESDPHFLTDLEKPIFERGGVDGYLLTTLFPLG
DLQSIRLWHDNSGPSPSWYVNRISVLDLETDQRWCFLCNSWLAIDVGDCLLDKAFRVATE
MDLKRFSNLFFMKTAKDFRDGHIWYSVINRPPRSPFTRVQRVSCCFSLLLCTMLTSIIFW
GVPKDPAQQKMDLGKIEFTWQQVLIGFESSLLMFPINLLIVQIFRNIRPRSRGMHVEKKQ
GKHGRISPSLPASSQSLQTCSLTPEAVIKDIQRIANSLTKTLKSPLPTLDKDFKKTTDIN
KLLALVENIIREQNKVDHEFYNESRKKEDPLILSLGSVDLQEHTTGSDSEKGVIEKQRRS
EYNRYLYLQLQHVENELDFLGSSKFQNPQSYTRAVRQVQHMKDLLENAILCSSSVSERLS
PTPSLSGDSKKGQSSKGLPWWFVFIGWALVAATSGVSAFFTMLYGLHYGKDSSIKWLISM
AISFFESVLITQPLKVLGFAAFFALVLKKVEQEDDGEGPIDSPLSTSGDPNALLATRRDS
SSNIYKPPPQIEVENMKKNSVKEQKVFGLIREILAYLGFLWMLLLVAYGQRDPNSYYLNK
AIENSFTSGFDDILGYNDFFKWANSTLITNLFSSYPGFVTDGNSKLVGSARIRQLRVKNN
ICRIPTKLKSSIKECHAQYSLHNEDLSEYSIQWNVTASQNSSDLDYVWQYWSQTELRSYP
IWGKLAMYRGGGYIAKLGTNAQNAYRVLQYLFDNTWLDTYTRAIFVEFTVYNANVNLFCI
ATLMLESNAVGAFFTHATLQSIRLYQYTDGLHIFVVAAEVAYFLFLIYYMVIQGKLLKKQ
KWNYFKSKWNLLETAIIMISWSALSVFIKRTILGKRDIEYYHNHRKGFVSFYETAMADAI
MGYLIAFLVLLATIKLWHLLRLNPKLNMITSTLRRAWGDISGFLTVILIMFLAYSIATNL
MFGWSMSSYKTIFDAAETMVSLQLGIFNYEEVLDYNPILGSFLIGSCIIFMTFVVLNLFI
SVILVAFSEEQKNYKASEEEEIVDLMLTKLCSFLGVKNKKASSLSAG
NT seq
7344 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgtagttttcagggggctcagaaatggtgtgaacgaggtgggggacatcttgct
ttcatcctgaatgaggaaactcaagagtttgtccagaagcacctggaagcagacaaagac
tggtggatcggcctcgccccatggaaacagaacctaacccaggacgaaacagatgaaacc
ctagcctggctggatggtaccaatgtcacatacagtaagtggtccccggaacatctgtcc
tctccatcagtggcttgttctcacattctccagaactctgggtaccactggatgagtgca
aacaactgcaaacaagaattttacttcatttgtgaatttgagtctgaacgagcatttgcc
tgtgatcactttaatgccacactacagtgtcagtctgggaaggtgattgaaatcaatagc
agtttttacggtcgtaaatctctctcctactgttccttggagaatgttgctccaactgag
tctgaagaatgcagctgggttgatgtgagagagaaagtggcaggtcagtgtcatgggcta
caggcttgccaagctgcagccgataagacatcctttggagatctctgtccaaggctgggc
aattaccttgtcatagactatcattgcaaagaaggactccgtatattggttgatgatgtg
tactcaattctggaaaatgtcacaatctcttcaaagtggttgcttcatccatattctgga
aacctcacctgcacacttaatactggcgatggctttatgattgatccctataatcctctg
cagccttctagcaatgtgacacacaaatacatgaccccgggactcttcactatcaatatt
gaatgtacaaccagcgaatggcatgtgacagcccaggaaactgtgtccatccaacagcca
atcagtggttttggaatcatcaagtgttgcaatgttaatcaaccagaagacactaataac
tgcacagttctgtatggggacccgttgtggattcagcttgaggttgaagaaggtactgat
gtgacctatgttatattagctggagcggtcacccttcacacattcactgcgcttagagga
gctgttcctcagaatgtcacagtggaaagcactgcccagcagcaaataggcccaggcata
catcagttaaccatccttgccaagaataatgtgacaacccaagaagtatctcagaatatt
acagttcaattggtggagccaatcaaggatttagaggcttcggtgaactcggttgttctg
gagttgggaaatgatctcaccattaacatctcagtctcctgtggtgccccaattgagcta
cagtttgaatttattggtcctaatgagacattttctgaagccattgaaaatcctgatgga
aaactgggggcttacagcattccaatgaattctgaaggtacctttctgattcgagggaaa
gctgtcaatgccttttctagtattagttttaatgttggaaatatcactgttgtggcaaat
acttcagctctgacacgccatgatatggatgctggagcttcctcacacaatggaatgtct
ccaacagaatcagttctgaaaagggaagcagatgagaggccagaaaaacttcaagctaaa
attaatggtggccaactagaggtggcaaatcctttctcgcagcttgttctgagtggaaga
aaatcgaagagtcgtgacttggatggccacagtgaaatgtctttccagtggtcatgtggt
gtttgttggccatcatgggacacttgtgtgcagagcaaccaaattgacacagtgcatcag
gatctgaccatccatccttcctgcctacctccacctaactctttcatctcaatcagacta
actgtaagtaaacctggcacaccaaacagtacggcagagaaatgtctgatcttcaccaag
aagagcaaaaaaggcatgaatatcagatgtgaagacaactgcaatccagttgattcttca
gaaaatgttacattgactgttgattgtcaagattgcaagaatccaatcaactataaatgg
tacagagtgaatccttcaaaagaacagatcaaactgccttctgcttgtaatatcaagcaa
caaaatattgctcaggaatcactgacattaataaaggaaaattccaatgtgttggtcttg
ggaaatgaggaactggttaagtttgctccagttttaaaattgagggcagtagggataagc
gacaatggtgattataagtacaaagattacattgttagtatgatgcctccactaccagtg
ccaacgtgcaatgtttttcccagggaagggtcaacagtctcaacaacattcagtatcaaa
tgcactgtcacctgcagctctaactcatcctgcagtgcttcaggccttacatactgtttc
tttgtaaaaccagatgttcctttacactgtggatcacagccgatattgccacctacttac
ctaccactgggagactcaaagaatgaaaaccagctgaatatcacagtcactgtcagaaac
agtgcaggctcctttaccagtattcttgttacagcgagggtttatgagttctcaaacatt
ggtactaacaaggatctagcaacactcctttcagaaaatataaaagatatatcaggtgca
acaaccaacaattctttactcattcaactatttgagtctgtgtcttccatactgaatcaa
gaggccaggacaggagctgtgggagaactggccctggaagacaaaaaagagttgagggaa
acaatgctttcaaacctgtctgttgtggatgtctcatcactgcacaaggctgtcgaagtt
tcagaagttctaaaacagctaacccacaggactgatgaactcacctctacatcacagctg
gaagccagttcaaccctactgaatatgggtaaatctttgctgaccctcagcgccgtgtat
gatgacgatcctgagaaaagaaccattgcagccaatactctctttaatgtggttagcaat
gttctggaagcttcagtagaaaatgatgtacgggatgatttggcaacagatacgcaaaga
gtgatatcagagaagctattggacacaattaaccatttgcagtctgtggtgcttaatgaa
gcaatcgcagatgaagagcccgtcctaatgacaatgccctcagtgagcatgtacctacag
aggatgccagcagacagcacagatgaaaattccatcattctccctgattccactgcgtca
agtttcactcttccagctttcccgtctctgaatattaaagatgacatggacacagttgat
gtgcgggtggtcagcttttcagtgaaccctttcatgtggacggggaaggacgaggtatca
ggagctgtgagtggtctgacactgacatcagtaaatggtaccattcattccgtccggaat
ctgacagaagatattgagataatacttcctagatctaatgtgatgaatgagaatcggact
gaatttaagctggtggacaatctgaccatcattcaagtgaatgtaacttctgacagtgga
actctgctgattcatctggaacccgagcaaagcattcccctgctcctctacttcaactat
gaatctgaacccaatgagaccagctttctagttaccacacaattacctaatattaagtac
actggagctgcaaaatacacctggcttatttctcccactgagctgatgtatggggttgga
acatattatttatccgtgaaacctgccccagatctaaactcttcattaccgaccaacatt
tctgtggccttcacttcctttatgtcccagtgtgtatactgggatgaagttaacagcaac
tggagttcatctggatgccgtgtgggccctttaacaagcagcagcagtactcagtgtctg
tgcaaccatctcaccttcttcagcagctccttctttgtcatgcccaatgtagtagatgtc
agcaagacagcagaactctttgccacatttgtggacaatccagtggttgttacgactgtc
gcctgcattttcgggctctatattcttactgttgtttgggcaagaagaaaagataggcaa
gacatggccaaggtgaagataacactacttgctgataatgacccattcgcccagtaccgc
tacctggtgacagtttttacaggacatcgcagaggagcagccaccacctctaaggtgact
attacactgtatggctcagagggagagagtgacccacacttccttactgaccttgagaaa
cctatctttgagagaggaggtgttgatggctatctcctcacaactctattcccacttggg
gatctccagagcattcgactgtggcatgacaactcagggcccagcccatcctggtatgtg
aatcgtatatcagtgcttgacttagaaacagatcagcgatggtgtttcctgtgtaactcc
tggttagcgattgatgtaggagattgtctcttggacaaagcctttcgagtggcaacggag
atggatctcaaacgtttcagtaatctgttcttcatgaagactgctaaggatttccgagat
ggacatatttggtattcagtgataaaccgcccaccaaggagtccattcacaagggtacag
cgtgtgtcgtgctgtttctccttgctcctctgcacaatgctgaccagtattatattctgg
ggagtaccgaaggatcccgcccagcaaaaaatggatctgggtaagattgagtttacgtgg
caacaagtgctgattggttttgaaagctcgctgctgatgttccccatcaatcttctcatc
gtgcagattttcagaaacatccggccgagatcgagaggaatgcacgtggagaagaagcag
ggcaaacatggccgcatatcaccttctttgccagcgtcttctcaaagtctacaaacttgc
tccctcacacctgaagctgttataaaggacatccagaggatcgctaattcactgactaaa
acactgaagagcccactgccaacactggataaggatttcaaaaaaacaacagatatcaac
aaacttttggctttagttgaaaatataatccgggagcaaaataaggttgaccatgagttt
tacaatgagagtcgtaagaaggaggatcctctcattctcagccttggatcagttgactta
caagaacataccactggctctgactcagagaagggagtaattgagaaacagcggcgaagt
gaatataatcgctatctgtacctgcagctccagcatgtggaaaatgaactggacttcctg
ggttccagcaaattccagaatccacagagctacactcgagccgtccgtcaggtgcagcac
atgaaggatcttctggaaaatgctatcctctgctccagttctgtttcagaaaggctctct
cccactcctagtctttctggagacagcaaaaaagggcaaagctctaaaggattaccctgg
tggtttgtcttcattggttgggctttggttgcagccaccagtggtgtatctgccttcttt
accatgctctacgggttacactatggcaaagacagttctatcaaatggctcatctccatg
gcaatctctttctttgaaagtgttctgataacacaacctttaaaggtattgggttttgct
gctttctttgcactggttttgaagaaagtagaacaggaagatgatggggaaggtccaatt
gacagtcccttatctacttcaggagaccccaatgctctgctagcaactcgaagggacagc
agcagcaatatctacaaaccaccacctcaaatcgaagtcgagaacatgaagaaaaattcc
gtaaaagagcagaaagtatttggtttgatcagggaaatacttgcatatttggggtttctg
tggatgttattattggttgcttatggtcagcgtgatccaaattcctattatctaaataaa
gccattgaaaacagcttcaccagtggttttgatgacatcttgggttacaacgatttcttc
aaatgggcaaacagtacgcttatcacaaatttattcagctcctatccaggctttgttacc
gatggcaactctaaactggttgggtccgcccgcattcgccaactgagagtaaagaacaat
atttgtcgcataccaacaaaactgaagagttctattaaagagtgtcatgctcagtactcc
ttgcataatgaagacctctccgagtacagtatccaatggaatgtgacagcatctcagaat
tcctcagatctggattacgtctggcaatactggagccaaactgaattgcgtagttatccc
atctggggcaagcttgccatgtacagagggggtggctacattgcaaaattgggtacaaac
gcacagaatgcttatagagtccttcaatatctatttgacaatacctggctggacacctac
acgcgagccatttttgtggaattcactgtctataatgcaaatgtgaatcttttctgtatt
gccacactaatgttagaaagtaatgctgtaggggccttctttacacatgctactcttcaa
agtatccgtctctaccagtacacagatgggctgcacatttttgttgttgcagctgaagtt
gcatatttcctcttcctcatctattacatggtgattcagggaaaactattgaagaagcaa
aaatggaattatttcaaaagcaaatggaaccttctggaaacagctattataatgatcagt
tggagcgcactttctgtattcatcaagagaaccattttgggaaagcgggacattgaatac
tatcacaatcacagaaagggctttgtgagtttctacgagactgcaatggcagatgcaatc
atgggttacctgatcgccttcctggttctcctagcaacaatcaaactttggcatctgctg
cgccttaaccccaagctcaatatgattacatcaactttaagacgagcctggggggacatc
tcaggctttctgactgtcattttaatcatgtttctagcctattctattgcaacaaatcta
atgtttggctggagtatgtcctcgtataaaactatatttgatgctgcagagacaatggtc
agtcttcaattggggatcttcaactatgaagaggtattggactataacccgattctgggt
tcgtttctgattgggtcctgcatcatctttatgacatttgtcgtcctgaatctcttcatt
tctgttatacttgtggcatttagtgaggagcagaaaaattacaaggcgtctgaagaagaa
gaaattgttgacttaatgctgacaaaactgtgcagcttcttgggggtcaaaaataagaag
gcttcctctctgtcagcagggtga
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integrated database retrieval system
