Scyliorhinus canicula (smaller spotted catshark): 119971258
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Entry
119971258 CDS
T11175
Symbol
tdrd12
Name
(RefSeq) putative ATP-dependent RNA helicase TDRD12 isoform X1
KO
K18409
ATP-dependent RNA helicase TDRD12 [EC:
5.6.2.5
]
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
scau03036
]
119971258 (tdrd12)
Enzymes [BR:
scau01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.5 RNA 5'-3' helicase
119971258 (tdrd12)
Chromosome and associated proteins [BR:
scau03036
]
Eukaryotic type
Gene silencing
piRNA pathway
119971258 (tdrd12)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TUDOR
DEAD
ARM_ARMC5
Helicase_C
Arm
HEAT_2
Motif
Other DBs
NCBI-GeneID:
119971258
NCBI-ProteinID:
XP_038662482
LinkDB
All DBs
Position
9:complement(39286578..39444084)
Genome browser
AA seq
1759 aa
AA seq
DB search
MMIEIFIIKVEDPGCFWGRITNGFSDLVENANQYERLEEKMNQLYHRSHEDLEEIKLPVL
EQGQICAIYCHELRCWCRAILKSLVSSGSSYLAECFLVDYAKHILVKAKDVRRAVDSFWK
LPYRAKRFSLFGIQPMTLHIDVCEEKAKIGPAVKWDSAAIQYFQRISLESEVVEAKLQGA
AGDTFAVQLYLTLNDETVCLNDDLVAKFFACYISPKNQNLAKNLKSSSEVSSVSCQKEEA
PVKKNIGHAALALWSETVQGTALTILNQGNEVSVGSAGQEAVSQCLQSRENLSCENLNKQ
CSKTTVSISSSKPVESVKTFSPCPLEKQSDCKKTRFYFHGEMRKDKKISTAMQKYDEIPA
STRLLQFLNPDPLNTKNELEFHLQQPSHKMAFDLWNGVLVHSYNKLSPCRSMEMSPVSLD
LKKELYKIKTGIPNIVQSYCWPAIGRGCDLVAVSKKGDDPLLYIPPLLTFLRLPSVYSCQ
PRRNLPLAIIICPGRQKAHFVCQVLMDLTRFSRPLSLSLILVGQDPEETKKMKLTKACDV
VVTTPHSLIRILQVHCLFFIRLSHLVLDRVDVLFEEAMDEMTTILQSFREATNVPERRST
LQQLIAVGKHWTKQMGSLVKENQSDPYVVITAMEEAALYGNVHQVVQVCLDCEKTSFLLT
MLDFTSEILQKTIIFTNCAEEVDHVFKALGSNSNFCMKVHEGMSIHVSNVMEQWNKKFNP
GTHVILVTTDNYLNALRITDATCVIHYHFPPSWDIFGARLCCMVDNFDNLIVEGSTLQSQ
SIILLTDKDAPQASSILHYLERTDAKVPKELYTFISDLNNIDAICYDKSLCKYLKAYGIC
RENKTCPSRHRLHRDVDKPRCLSGEKKLPASGYVEITPTCISDATSYYGRIIHHRSKWED
PPVSMEEDYLMLLKDMADYYSEENHRKPVEQLVVSALYGLEEKTYSRVQLIALSQKTESA
VLSNARIKYIDIGQTGQVMQKQLLELPAKFQGLPPQVVEFIICRVKPIDNEMDWNPQVSR
FIKQKISNKSLNAKIVLALGNTLWLNTVVHMAKLTDLKTTILEYNIRSEIMNSGFGTDNA
EHIEQLKELCRIAGLCLTDEDSPLKQPLYDKKLEYAILKNDGNYYSVIISEFHSPKQFYV
QLVETREALCALENEINQRALGKETSISGSYVPAVGDLCLAFCETKKRWRRVEVLSVLYT
KRNCTVFFVDFGTCSCVSLNNIQPLVKDVLQLPFQAICCSLFGVEPVEENWNPEIKELVF
NTFQDKELQVKVIEQNRNDLTAVVCYHVVVQDPSNAGSLKLSECIVSKGQGEGPPAILNQ
LFPEEAVINGQTSSISCLGSSVCALLGDQNLNSSSLRTTTVEELKNMVLQYPADNASESS
LSFLCRLLQFLSTKEQADVIVAMTHLAKMQVRNLDEIKNEKGICVLVNLLQVTNAELQES
VCVALGILSENRDLSTAIIDADALKHLCHLLKKPIENNVWEAIIGALAALLSSSRVCEEI
EEQDIICHLCTKIQQSSKDKVLENILKVLCHLSGRPQSLNLMLSSGLAVTVERLLASTSN
RSALYEIANNLKFSLASFQNLYCLQNGAAFCDGNTDIVDVPEDAKNRSTMDHKSFHPEIK
WHQKEDRLILNVKLRNFTKHSCKFGDCRVVFSAFVGIKLYLADLELQGSILEEKCSCVAI
NEEPVITLFKEENGEWSNLLKFKNPNVTFDFNYFEEAMDDVSLPIFNDFRRKGQQVIMEP
SVDECGSFTSANDSSEEDY
NT seq
5280 nt
NT seq
+upstream
nt +downstream
nt
atgatgattgaaattttcattataaaggtggaagaccccggctgtttctgggggcgaata
actaatggcttcagtgatctggttgaaaatgcaaatcagtatgaaagattggaggaaaag
atgaatcaactctaccacagaagccatgaagatttggaagaaattaagcttcctgttcta
gaacaagggcagatatgtgctatttactgccatgaactacggtgctggtgcagagcaata
ttaaaatctcttgtatcaagtggaagcagttatcttgcagagtgtttccttgtggactac
gcaaagcacattctggtgaaagcaaaagatgtacgaagagcagttgattccttttggaag
ctaccataccgtgctaaaaggttttcattgtttggcatacagccaatgacattgcacatt
gatgtttgtgaagagaaagcaaaaattggtccagcagtaaaatgggatagtgccgcaata
caatatttccaaagaatatctctagaatctgaagttgttgaagcaaaattacagggtgct
gctggggatacctttgcagttcaattatatctcactctgaatgatgaaacggtgtgtctg
aatgatgatttagtagcaaaattttttgcatgttacatttcaccaaaaaatcaaaatctg
gcaaaaaatctgaaatcttcatcagaggtctcttcagtatcgtgccagaaagaagaagca
ccagttaagaagaacattggtcatgcagcattagctctttggtctgaaactgtacaaggg
actgcacttacaatattaaaccaaggaaacgaagtatctgtaggctctgctggccaagag
gcagtttctcaatgtctacaatctcgagaaaacctatcctgcgaaaacttgaataaacaa
tgcagcaagacaactgtatcaatatccagcagcaaaccagtggagtcagtcaaaacgttt
tccccttgtcctttggaaaaacaatcagattgcaagaaaacaaggttttacttccatggt
gaaatgagaaaggacaagaaaatctccacagctatgcagaaatatgatgaaataccagcc
tcaacaaggcttctacagtttttaaacccagatccattgaacacaaaaaatgagctggaa
tttcatttgcaacagccatcccacaaaatggcttttgacctatggaatggagtcttagtg
cattcatacaacaaattgagtccttgcagaagcatggaaatgtcacctgtttctctggat
ttgaaaaaggaattatataagataaaaactggtattccaaacattgtgcaatcttactgc
tggcctgctataggtcgtggttgtgacttagttgcagtatcaaagaaaggagatgaccct
cttctatacatccctcccttgttgacgtttctacggttaccatctgtatacagctgtcaa
cccagacgaaatttgccattagcaataattatttgccctggacgacagaaggcccacttt
gtgtgccaggtgttaatggacttaacaaggttttctcgacctctttctctatcgctgatt
ttggttggacaagatccagaagaaacaaagaaaatgaaacttaccaaagcatgcgatgta
gttgttactacgccacacagtctgatacggatccttcaagtacattgcctattttttatt
agactcagccatttggtgttggacagggttgatgtactttttgaggaagcaatggatgaa
atgacaaccatcctgcaaagcttcagggaagctactaatgttccagagagaaggtcgacc
ctacaacagctcattgctgttggaaagcattggacaaagcaaatgggcagtttagtaaaa
gaaaatcaaagtgatccttatgttgttataacagccatggaagaagctgcactgtatgga
aatgtacatcaggttgtgcaggtttgtctggattgtgagaagacatcatttttgctaacc
atgttagacttcacttctgagattttgcagaagactattatctttactaattgcgctgag
gaagtggatcatgtgttcaaagctttgggcagtaattcaaatttctgcatgaaggtccat
gaaggaatgagcatccacgttagcaatgtaatggagcagtggaataagaaattcaatcct
ggcacacatgtgatattagttacgactgataactatctcaatgccttgagaatcacagat
gccacctgtgtgatccattatcattttcctccatcttgggatatatttggagctcgccta
tgttgcatggttgacaattttgataatctgattgtggagggatcaactcttcaaagtcag
tcaatcatactactgaccgacaaagacgcaccacaagcatcttctattctgcactatctg
gaaagaaccgatgctaaagttcctaaagagctatatacatttatttctgatctgaataac
atcgatgccatttgctatgacaaatctttgtgcaaatacctaaaagcatatggaatctgc
agggagaacaaaacatgcccaagtcgtcacagacttcaccgagatgtggacaaaccacgg
tgtctttcaggtgaaaagaagttgcctgcctcaggttacgttgagattactccaacatgt
atcagtgatgctaccagttattatggtagaataattcatcacagaagtaaatgggaggat
cctcctgtttcaatggaagaggactatctgatgcttttgaaagatatggctgattactac
tcagaagagaaccacaggaaaccagtagagcaattggtagtttctgctctatatggattg
gaggaaaaaacatatagcagggtacagttaatagcattgtcacagaagactgagagtgca
gttctcagtaatgcaagaataaagtacattgacattgggcaaactggacaagtgatgcag
aaacagctgctcgaactacctgccaaatttcagggtctgccaccacaggttgtcgaattt
attatatgtcgagtaaaacctattgacaatgaaatggattggaatccacaggtttccaga
tttattaaacaaaagatcagcaataaatcactcaacgccaaaattgttcttgctcttggt
aatactttatggctgaatactgtagtacacatggctaaattaactgatctgaagaccaca
atattggaatataacattcgctcagaaatcatgaattctggatttggaacagataatgca
gagcacattgaacagttgaaagaactctgtaggatagctggactttgtttgactgatgag
gattctcccctgaagcagccactttacgacaagaagttagaatatgccattctcaagaat
gatggaaactactattcagtcataatttctgaatttcatagtccaaagcaattctacgtg
cagttggtggaaacacgggaagcgctttgcgctttagagaatgaaattaaccaaagagcc
ctgggaaaggaaacttccatttcaggcagttatgtgccagctgttggtgacttgtgcttg
gcgttttgtgaaacaaaaaagaggtggcgtagagtggaggtcttgtcagttctctacacc
aaaaggaattgtacggtgttctttgtggattttgggacatgcagctgtgtttcattgaac
aacattcaacctttagtgaaagatgtccttcagcttccttttcaggccatctgctgttca
ttatttggtgtggaacctgtggaagaaaactggaacccagagattaaagagttggtattc
aatacttttcaggacaaggagctccaagttaaagttattgaacaaaatagaaatgatcta
actgctgttgtgtgctaccatgtcgttgtgcaagatccctctaatgctggctctttaaaa
ctatcagaatgtattgtatctaaaggacaaggtgaagggccacctgcaattttaaaccaa
ttgtttcccgaagaagcagtaataaatggtcaaaccagctccatttcatgcctcggttct
tctgtttgtgcccttttaggagatcaaaatctaaattcatcttcattaagaaccacaaca
gtggaggaactcaaaaacatggtgctgcagtatcctgcagacaatgcatcagaatcaagt
ttaagcttcctgtgcagattgctacagttcctttctactaaagaacaagctgatgtaata
gtagcaatgactcatttggccaagatgcaagtaagaaatctggatgaaatcaaaaatgaa
aaaggaatttgtgtgcttgtgaacctacttcaggtaaccaatgcagaactacaagaaagc
gtctgcgttgcacttgggattctaagtgaaaaccgtgatctcagtacagctattattgat
gccgatgcattgaagcacctttgccatttactgaaaaagccgattgaaaataatgtgtgg
gaagctattattggagctttagctgcacttctttcctccagcagggtttgtgaagaaatt
gaagagcaagacattatctgtcatctttgtacaaaaattcagcaatcttcaaaggataag
gttttggaaaacattctgaaggttttgtgtcatctcagtggaagaccccagagtctaaat
ttaatgttatcaagtggacttgctgtgactgttgagaggctgttagcgagcacatctaac
aggagtgctttatatgaaattgcaaacaatttgaagttttcactggccagttttcaaaat
ttatattgcttacaaaacggtgcagccttctgtgacggaaatactgatattgtggatgtt
cctgaagatgcaaaaaatcgatcaacaatggatcataaaagctttcacccagaaataaag
tggcatcagaaggaagaccggctcatactgaatgtgaagttgcgaaattttacaaaacat
tcatgcaaatttggtgattgcagagtagtatttagtgcctttgttggtatcaaattatat
ttggcggatttggaacttcaaggtagcattttagaggaaaagtgttcatgtgtcgctata
aatgaagagcctgtcataacactgtttaaagaagagaatggtgaatggagcaatttgctg
aaattcaagaatccaaatgtcacttttgatttcaactattttgaggaagcgatggatgat
gtatctcttccaattttcaatgattttagaagaaagggacaacaagtaataatggaaccc
agcgtagatgaatgtggtagttttaccagtgctaatgacagttctgaagaagattactga
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