Scyliorhinus canicula (smaller spotted catshark): 119971283
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Entry
119971283 CDS
T11175
Symbol
vps35
Name
(RefSeq) vacuolar protein sorting-associated protein 35 isoform X1
KO
K18468
vacuolar protein sorting-associated protein 35
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Pathway
scau04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
119971283 (vps35)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
scau04131
]
119971283 (vps35)
Membrane trafficking [BR:
scau04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Retromer subcomplex
119971283 (vps35)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps35
FerA
Motif
Other DBs
NCBI-GeneID:
119971283
NCBI-ProteinID:
XP_038662562
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Position
9:complement(45858651..45926180)
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AA seq
796 aa
AA seq
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MPTTQQSPQDEQEKLLDEAVQTVKVQSFQMKRCLDKNKLMDALKHASNMLGELRTSMLSP
KSYYELYMAISDELHYLEVYLTDEFAKGRKVADLYELVQYAGNIIPRLYLLITVGVVYIK
SFSQSRKDILKDLVEMCRGVQHPLRGLFLRNYLLQCTRNILPDEGEETEEVVTGDINDSM
DFVLLNFAEMNKLWVRMQHQGHSRDREKRERERQELRILVGTNLVRLSQLEGVNVERYKQ
IVLTGILEQVVNCRDGLAQEYLMECIIQVFPDEFHLQTLNPFLRSCAELHQSVNVKNIII
ALIDRLALFAHREDGPGIPADIKLFDIFSQQVATVIQSRQDMPSEDVVSLQVSLINLAMK
CYPERVDYVDKVLETTVEIFNKLNLEHIATSSAVSKELTRLLKIPIDTYNSILTVLKLKH
FHPLFEYFDYESRKTMSCYILSNALEFNTEIIGQEQVDAVLNLVSTLIQDQPDQPAEDPD
QEDFAEEQSLVGRFIHLFQSEDPDQQYLILNTARKHFGAGGNQRIRFTLPPLVFSAYQLA
FCYKENSKVDEKWEKKCQKIFSFAHQTISALIKAELAELPLRLFLQGALAAGDIGFENHE
TVAYEFMSQAFSLYEDEISDSKAQLAAITLIIGTFERMKCFSEENHEPLRTQCALAASKL
LKKPDQCRAVSICAHLFWSGRNTDKNGEEIHDGKRVMECLKKALKIANQCMDPSLQVQLF
TEILNRYIYFYEKENEAVTIQVLNQLIQKIREDLPNLESSEETEQINKHFHNTLEHLRLR
RESPEADGPIYEGLVL
NT seq
2391 nt
NT seq
+upstream
nt +downstream
nt
atgccgacaactcaacagtcaccccaggatgagcaggaaaagcttcttgatgaagctgta
cagactgtgaaggtccagtcgttccagatgaagcgatgcttggacaagaataaattgatg
gatgcactaaaacatgcttcgaatatgcttggtgagctgcgcacttccatgctatcaccg
aagagttactatgagctctacatggccatttcagatgaattacattatttggaagtttat
ctgactgatgagtttgccaaagggcgaaaggtggctgacctctatgagcttgttcagtat
gctggcaatattattccaaggctctacttgcttatcactgttggagttgtctacatcaag
tcattttctcagtccaggaaggatattcttaaggatctggtggaaatgtgtcgaggggtg
cagcatccattgcgagggctcttcctcaggaactatctgcttcaatgtacgagaaatatt
ttgccagatgaaggggaggagactgaagaagttgtaactggagacatcaatgattccatg
gactttgtgctcctgaactttgcagaaatgaacaaactctgggtacgaatgcaacaccag
ggtcacagcagagaccgtgaaaagcgggaacgtgaacgtcaagaactgcgaatcctcgtt
ggtacaaacttagttcgactaagtcagttggaaggggttaatgtagaacggtacaagcag
attgtattaactggaatattggagcaggttgtaaactgcagggatggcttggctcaagag
tatctcatggaatgtatcattcaggtattccctgatgagtttcatctgcagacgctgaat
ccattccttcgttcttgtgcagagctccatcaaagtgttaatgtcaaaaacattatcatt
gctttgattgatcggttggctttgtttgcgcatcgtgaagatggtcctggaatccctgct
gatataaaactgtttgacatcttttcccaacaagtagcaacagttatacagtcaagacaa
gatatgccttctgaagatgttgtatctttacaagtatctcttatcaacttggccatgaag
tgttaccctgaacgggtggactatgttgataaagttcttgaaacaactgtggagatcttt
aacaaactcaatctcgaacatattgctactagcagtgcagtttctaaagaattaacacgg
cttctaaagattcccatcgacacgtacaacagcatcctgactgtattgaagttgaaacac
ttccatcctttgtttgaatactttgactatgagtcacgcaaaactatgagctgttatata
ctaagcaatgcacttgagttcaacaccgagataattggacaagaacaggtggatgctgta
ctgaacctggtgtcgacattgattcaggatcagccagatcaaccagcagaagatcctgat
caagaagattttgctgaagagcaaagtcttgttggtagatttattcatttatttcaatct
gaagatcctgaccaacagtatctgattttaaatactgccagaaaacactttggtgctggt
ggaaatcaaaggattcgtttcactttaccaccactggtattttctgcttaccagctggcc
ttctgctacaaagagaattcaaaagtggatgaaaaatgggaaaagaagtgccagaagata
ttttcttttgcccaccagacgatcagtgccctgattaaagcagagcttgcagagttacca
cttcgtctatttctccagggagcactagcagctggggatattggatttgagaatcatgaa
accgtggcttatgagtttatgtcacaggcattctctttgtatgaagatgaaatcagtgat
tcgaaggcacagctggcagcaatcactttgataattggaacatttgagcggatgaaatgt
ttcagtgaagagaaccatgagcctttgaggacacagtgtgcattggctgcttcaaagtta
cttaaaaagccagatcagtgccgtgctgttagcatctgtgctcatttattttggtctggg
cggaacacagataagaatggagaggaaattcatgatggcaagagagtgatggaatgcctt
aagaaggcgttgaagatagccaatcagtgtatggatccatcactacaagtacagctcttc
actgaaatccttaatcgatacatatacttttatgagaaagaaaatgaggcggtgactatt
caagtcttaaatcagcttattcaaaaaataagagaagatctcccaaacttagaatccagc
gaagaaactgagcaaattaacaaacactttcacaacacactggagcatctgcgtctgcgg
agagaatcacctgaagctgatggacctatttatgaaggtcttgtcttgtaa
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