Scyliorhinus canicula (smaller spotted catshark): 119971486
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Entry
119971486 CDS
T11175
Symbol
trim71
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM71
KO
K12035
tripartite motif-containing protein 71 [EC:
2.3.2.27
]
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scau03019
]
119971486 (trim71)
04121 Ubiquitin system [BR:
scau04121
]
119971486 (trim71)
Enzymes [BR:
scau01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
119971486 (trim71)
Messenger RNA biogenesis [BR:
scau03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
119971486 (trim71)
Ubiquitin system [BR:
scau04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
119971486 (trim71)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NHL
Filamin
DUF4934
DUF5128
zf-B_box
SGL
ANCHR-like_BBOX
zf-C3HC4
PspA_IM30
DUF5711
Beta-prop_IFT122_1st
zf-B_box_Trim66
zf-RING_UBOX
TP_0783
TXNDC16_N
CRLF3_N
Motif
Other DBs
NCBI-GeneID:
119971486
NCBI-ProteinID:
XP_038662995
LinkDB
All DBs
Position
9:82260295..82348364
Genome browser
AA seq
893 aa
AA seq
DB search
MWISRSLQRGAVLAEEAERLPSPRPPELAQGRFYPRCYQRSDAAMAAPFCGQEPAAPPQC
QGSAAPPQAPSRPEAPAAQPPQCGLCHSRGPRSRSLAAGPPPPSAAGGPAEELRLLPCRH
SLCHACLEAHRRRRRGGGPPVNRHRPGNGPGPEAEGSSSCSSSSSSSSSCSGNSAELSCP
ICERLIPAADSEGLPAELLLLNNLLDVVSAAEDELEPGCGGNVRGRARPKNSQAGCSSCD
EGAPVTSRCLDCAEYLCDHCVRAHQRVRLTKEHVIHRFRQQQQHYNQQPFPSLPLTHERV
SYCQQHDNEVMRLYCDTCAVPICRECTMSRHVGHSFVYLQDAVQDSKEITLQLLADAQQG
RQAIQLSIEKVRAMVEQVEMKAQVIRSEVKAVTSRHKKALEERECDLLRKVEKIRQMKAK
TLHLQVEALRENLTRLESTIDCVQKALLDGRDVDVLLAKEQMFVQIQDLKKLRNLLQPQD
DDTLSFIPPDGVLYKAIKSLGIISSSAYAPISTATGEGLKRALRGKMSSFTVITKDHTGE
GRSSGGDLVVVVIMGPDGCLFRADVLDHHDGTYTISYSPHLEGEHVVSVTIRGQHIENSP
FRVIVKAGRNYGGIGLPICSFGGEGDEDGQLCRPWGVCVNKEGYIIIADRSNNRVQVFTP
SGTYHHKFGTAGARPGQFDRPAGVACDQNCRIVVADKDNHRIQVFTFEGQFVLKFGEKGS
KNGQFNYPWDVAVNTDGKILVSDTRNHRVQLFGPDGNFVSKYGFEGALWKHFDSPRGVAF
NHEGHLVVTDFNNHRLLVIHPDFQSARFLGSEGTSNGQFLRPQGVAIDQEGRIIVADSRN
HRIQIFEPNGNFLCKFGSQGSGFGQMDRPSGIALMPDGLIVVVDFGNNRILLF
NT seq
2682 nt
NT seq
+upstream
nt +downstream
nt
atgtggatttcccggtcactgcagaggggagcggttctcgctgaggaagccgagcggctg
ccgtctccccggccgcccgagctggcccagggccgcttctacccgcgctgctaccagcgc
tcggacgccgccatggccgccccgttctgcggccaggagccggcggcaccgcctcagtgc
cagggcagcgcggccccgccgcaggctcccagccggcccgaggccccggcggctcagccc
cctcagtgtggcctctgccactcccgggggccgcgctcgcggagcctggcggccgggccg
ccgcctccatcggcggcggggggcccggccgaggagctgcgcctgctgccctgccgccac
tccttgtgccacgcctgcctggaggcccaccggcggcggcggcgcgggggcgggccgccg
gtcaaccggcaccggccgggcaacgggccgggccccgaggctgagggctcatcctcctgc
tcctcctcttcctcctcctcgtcctcctgctcgggcaactcggccgagctcagctgcccg
atctgcgagcgcctgattccggccgccgacagcgaggggctgccggccgagctgctgctg
ctcaacaacctgctggacgtggtgtcggccgccgaggacgaactggagcccggctgcggg
gggaacgtccggggccgggcccggcccaagaactcgcaggccggctgcagctcgtgtgac
gagggcgccccggtgacctcccgctgcctggactgtgccgagtatctgtgcgatcactgt
gtgcgggcccatcagcgggtccgcctcaccaaggagcatgtcatccaccgcttcaggcag
cagcaacaacactacaatcagcagcccttccccagcctgccgctcacacacgaacgggtc
agctactgccagcagcacgacaacgaagtgatgcgcctgtactgtgatacttgcgctgtc
ccaatttgtcgagaatgcacaatgagccgccatgtaggacacagctttgtctacctccag
gatgccgtacaggactccaaagaaattaccctacagttgttggcagatgcacagcaaggc
cgacaggcaattcagctcagtatagagaaagtcagagccatggttgaacaagtcgaaatg
aaagctcaagtgattcggtcagaagtcaaagcagtaacttcacggcacaagaaggctctg
gaggaacgtgaatgtgacctgttaagaaaggttgaaaagatccggcagatgaaggccaag
actctacaccttcaggtggaagcgctgcgtgagaatttaaccagactggagagcacaata
gactgtgtgcagaaagccttactggatgggcgagatgtggatgtactcttggcaaaagaa
caaatgtttgtccaaattcaggacttaaagaaacttcggaatctccttcagcctcaagac
gatgacacactttcattcattccgcctgatggtgtcctgtacaaagccattaagtcattg
ggcataatcagtagcagcgcatatgccccaatatctacagctactggcgaggggttgaaa
agggcactacgtgggaaaatgagcagtttcactgtaatcaccaaggatcacactggcgaa
ggaaggtcttcaggtggtgatttggtcgtagttgttatcatgggacctgatggctgtctc
ttccgcgctgatgttcttgatcatcacgatggcacctacacaattagctactctccacat
ctagaaggagaacatgtggtctcggtgacaattcgcggccagcatattgagaacagcccc
tttcgagttattgtcaaagccggtcgcaactatggtggcattgggcttccaatttgttcc
tttggcggagaaggggatgaagatggacaactttgccgaccatggggtgtttgtgtcaac
aaagaaggctatattattatcgctgaccgtagcaacaaccgtgttcaggtattcacacca
agtggaacctatcaccacaagtttggaacagcaggtgccagacctgggcagtttgaccgt
ccagctggtgttgcctgtgatcagaattgtcgaatcgtagtggccgataaggacaaccac
cgcattcaggttttcacctttgagggacaatttgtcctcaagtttggggagaaaggaagc
aagaatggccagttcaactacccttgggatgttgcagtgaatactgatggaaagatcctt
gtatctgacactcgcaatcatagagttcagctttttggcccagatggaaactttgtaagt
aaatacggctttgagggagctttgtggaagcactttgattctcctcgtggagtggccttt
aaccatgaaggacaccttgtggtcaccgatttcaacaaccaccggctgctggtaatccat
cccgacttccagtctgcacgcttccttggctctgaaggcacaagtaatggtcagttcctc
cgacctcagggtgtagctatcgaccaagaagggcgcatcattgtggctgactccaggaat
catcgcatccagatctttgaaccaaatggcaacttcctgtgcaagtttggatcccaagga
agtggttttggccagatggatcgtccgtccggaatagccctgatgccagatggactaata
gtagtcgtcgactttggcaacaatcgtatcctcttgttttaa
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