Scyliorhinus canicula (smaller spotted catshark): 119971499
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Entry
119971499 CDS
T11175
Symbol
sf3b3
Name
(RefSeq) splicing factor 3B subunit 3
KO
K12830
splicing factor 3B subunit 3
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Pathway
scau03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119971499 (sf3b3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
scau03021
]
119971499 (sf3b3)
03041 Spliceosome [BR:
scau03041
]
119971499 (sf3b3)
03036 Chromosome and associated proteins [BR:
scau03036
]
119971499 (sf3b3)
Transcription machinery [BR:
scau03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
119971499 (sf3b3)
Spliceosome [BR:
scau03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
119971499 (sf3b3)
Complex B
119971499 (sf3b3)
Complex C
U2 SnRNP specific factors
119971499 (sf3b3)
Chromosome and associated proteins [BR:
scau03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
119971499 (sf3b3)
TFTC complex
119971499 (sf3b3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Motif
Other DBs
NCBI-GeneID:
119971499
NCBI-ProteinID:
XP_038663034
LinkDB
All DBs
Position
9:complement(86626468..86699855)
Genome browser
AA seq
1217 aa
AA seq
DB search
MFLYNLTLQRATGISHAIHGNFSGTKMQEIVVSRGKILELLRPDANTGKVHTLLTVEAFG
IIRSLMAFRLTGGTKDYIVVGSDSGRIVILEYQPSKNIFDKVHQETFGKSGCRRIVPGQY
LAVDPKGRAVMIGAIEKQKLVYILNRDAAARLTISSPLEAHKANTLVYHVVGVDVGFENP
MFACLEMDYEEADSDPTGEAAANTQQTLTFYELDLGLNHVVRKYSEPLEEHGNFLITVPG
GSDGPSGVLICSENYITYKNFGDQPDIRCPIPRRRNDLDDPERGMIFVCSATHKTKSMFF
FLAQTEQGDIFKITLETDEDMVTEIRLKYFDTVPVSTAMCVLKTGFLFVASEFGNHYLYQ
IAHLGDDDDEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDELDSLSPILTCQIADLANEDT
PQLYVACGRGPRSSLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHVEDEYDAYIIVSFVN
ATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGEDALVQVYPDGIRHIRADKRVNEWKTPG
KKTIVKCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERKEMSTDVVCMSLANVPPGEQ
RSRFLAVGLIDNTVRIISLDPSDCLQPLSMQALPAQPESLCIVEMGGAEKQDELGEKGSI
GFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQEAVLAMSSRSW
LSYSYQSRFHLTPLSYETLEYASGFASEQCPEGIVAISTNTLRILALEKLGAVFNQVSFS
LQYTPRKFVIHPESNNIIAIETDHNAYTEATKAQRKQQMAEEMVEAAGEDERELAAEMAA
AFLNENLPESIFGSPKAGSGQWASVVRVMNPIQGNVYDQIQLEQNEAAFSIAVCKFGNGG
DDWYVLVGVGKDLILNPRSVGGGYIYTYKLINSGEKLEFVHKTSIEDVPTAIAPFQGRVL
VGLGKLLRIYDLGKKKLLRKCENKHIPNFIVAIHTIGHRVVVSDVQESFFWIRYKRNENQ
LIIFADDTLPRWITTACLLDYETMAGADKFGNISVVRLPPNTSDDVDEDPTGNKALWDRG
LLNGASQKAEIIVNYHVGESVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDF
FQHLEMHMRSEHPPLCGRDHLSFRCYYFPVKNVIDGDLCEQFNSMDPIKQKSVAEELDRT
PAEVSKKLEDIRTRYAF
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
atgtttttgtataacctgacccttcagagagcaactggcatctcgcatgccattcatgga
aacttttcaggcaccaaaatgcaggagattgttgtttccagggggaagatcttggagtta
ctccgcccagatgcaaatactgggaaggtacatacacttcttacagtggaggcctttggg
ataattcgttctctaatggccttcaggttaactggaggtaccaaagattacattgtagtt
ggtagtgactctggtaggattgttatcttggaatatcagccatccaagaatatttttgat
aaggtccatcaggaaacctttgggaagagtggatgccgccgtattgtacctggacagtac
ctagcagttgacccgaaaggccgtgccgttatgataggtgccattgagaagcaaaagctg
gtctatattctgaacagagatgctgctgctcgtctcaccatctcctcaccactggaagca
cacaaagcaaacacattggtgtatcatgtggttggtgtggatgtgggctttgagaatcct
atgtttgcttgtcttgagatggactatgaggaggcagacagcgatcctactggtgaagca
gctgctaacactcaacagacattgacattctatgagttagacttgggcctgaatcacgtt
gtaaggaagtacagtgaacctctggaggaacatggcaacttcctcattacagttccagga
ggttctgatggaccgagtggtgtactaatctgctctgaaaactacatcacttataaaaat
tttggggaccagcctgacatccggtgccccatccccaggaggaggaatgacctggatgat
cccgagcgaggaatgatcttcgtctgctctgctacgcataaaacaaagtccatgttcttc
tttctggcacagactgaacaaggggacatcttcaaaattacactggaaacggacgaggac
atggtgactgaaattaggctgaagtattttgacactgttcctgtgtcaactgccatgtgt
gtcctgaagaccggatttctctttgttgcatcagaatttggcaatcattacctttatcag
attgcacatctaggagatgatgatgatgagccggagttctcctcagccatgcctttggaa
gaaggagatacctttttctttcagccacgacctctcaagaacctggtactggtggacgaa
cttgacagcctttcaccaattttgacatgccagattgctgatctggccaatgaagacaca
cctcagctatatgttgcctgtgggagaggtccgcggtcatcattgagagtcctgaggcat
ggtcttgaggtatcggaaatggctgtctcagagctgcccggtaatcctaatgccgtatgg
actgtaagaagacatgtggaagatgagtatgatgcatacatcattgtgtctttcgtgaat
gccacgctggtactgtctattggtgaaaccgtagaggaagtgacagactcgggatttctg
ggtaccacccccactctctcctgttccttgcttggtgaggatgcactggtccaggtgtac
cccgatggaatccgtcacatccgtgctgacaagagagtcaatgagtggaagacgcctggt
aaaaagacgattgtgaaatgtgctgtgaaccagcgacaggtggtgattgctctgaccggc
ggggaactggtctactttgagatggatccgtctggacaactcaatgagtacacggaacgg
aaagagatgtcaactgatgtggtctgcatgagtttagcaaatgtccctccaggggaacag
cgttctcgatttctggctgttggtctcatagacaacactgtccgaattatttctctggac
ccttcggattgtctgcagcctctcagtatgcaagcccttcctgcacagcctgaatctctc
tgtatagttgagatgggaggtgcagagaaacaggatgagctgggagagaagggttccatt
ggcttcttgtacttaaacattggtttacagaacggagtattattaaggacagtgttggat
ccagtcactggagacttgtctgacacacggaccagatatctcggatcacggcctgtcaag
cttttcagagtcaggatgcaagggcaagaagcggttttggccatgtccagcaggtcgtgg
ctaagctactcttaccaatcccgcttccacctgacacctctgtcctatgaaactctggaa
tatgcatctggctttgcttctgagcagtgtcctgagggtattgtggcaatctccaccaat
acattgagaattttggctctcgagaaacttggagcagtgttcaatcaggtttccttctct
ttgcaatatactccaaggaaatttgtcattcacccagagagcaacaacatcattgccatt
gagactgatcataatgcctacacggaggccaccaaagcccagcgcaaacagcaaatggct
gaggaaatggtagaagcagctggagaggacgagcgagaattggcagcagagatggcagct
gcctttttgaatgagaatttacctgaatccatttttggatctccgaaggcagggagtggg
caatgggcatctgttgttcgagtaatgaaccccatccagggcaacgtgtatgatcagatc
cagttggaacagaatgaagctgctttcagtattgctgtttgtaagtttggcaatggtggc
gatgattggtacgtgctggtaggagttggcaaagatctgatccttaatcctcgttcagtt
ggaggtggatacatttacacctacaagctaatcaacagcggtgagaagctggaatttgtg
cacaagacatccattgaagatgttccaacagccattgcccctttccaaggccgcgttctg
gtcggattgggaaaactcctgcgcatctatgacctggggaagaagaagctactgagaaaa
tgtgaaaataagcacattccaaacttcatagtggcgatccataccattggacatagagtc
gttgtctccgatgtccaggaaagcttcttctggattcgatataaacgaaatgagaaccag
ttgatcatctttgctgatgacacgttgccccgctggatcaccacggcttgtctattggac
tatgaaaccatggctggtgctgataaatttggcaacattagtgtggtgagattgcctcca
aacacaagtgacgatgttgatgaggatcccactgggaacaaagcattatgggacagaggc
ctacttaatggagcttcccagaaggctgagatcatcgttaattatcatgtgggagaatca
gtcctttcactgcagaaaaccacgttaattcctggtggctcagaatcgcttgtgtacaca
acactgtctggaggtatcgggatcctggtcccattcacatcacacgaggatcatgatttc
ttccagcacctggagatgcacatgagatcagaacatcctccactctgtgggcgtgaccac
cttagttttcgctgttactatttccctgtaaagaatgtaatcgatggtgacttgtgtgaa
cagttcaattccatggatcccatcaaacagaaaagtgtggcagaggaacttgacagaaca
ccagctgaggtgtccaaaaaactggaagatatccgaacccgttacgcattttaa
DBGET
integrated database retrieval system
