Scyliorhinus canicula (smaller spotted catshark): 119971822
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Entry
119971822 CDS
T11175
Symbol
irf7
Name
(RefSeq) interferon regulatory factor 7
KO
K09447
interferon regulatory factor 7
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Pathway
scau04620
Toll-like receptor signaling pathway
scau04621
NOD-like receptor signaling pathway
scau04622
RIG-I-like receptor signaling pathway
scau04623
Cytosolic DNA-sensing pathway
scau05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
119971822 (irf7)
04621 NOD-like receptor signaling pathway
119971822 (irf7)
04622 RIG-I-like receptor signaling pathway
119971822 (irf7)
04623 Cytosolic DNA-sensing pathway
119971822 (irf7)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
119971822 (irf7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
scau03000
]
119971822 (irf7)
Transcription factors [BR:
scau03000
]
Eukaryotic type
Helix-turn-helix
Tryptophan clusters interferon-regulating factors
119971822 (irf7)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
IRF-3
IRF
TOR1L1_N
MH2
Motif
Other DBs
NCBI-GeneID:
119971822
NCBI-ProteinID:
XP_038663941
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Position
9:complement(156615433..156642673)
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AA seq
485 aa
AA seq
DB search
MNNQKPQFRPWLIQQVNGGCYHGLCWLDLNKAIFRIPWKHAGRQDLCENDYSIFKAWAIV
SGKFTEGPRKWKTNFRCALNSNDSFTLIDDNSKESSDPHKVYAITNQKANAAPNLLQEDD
NLESRLYISPETSPAQPDFTLYNPHQSFELQVDECIPHFGLMNLTDGLADQVAPDPLNAV
GFFSPMMNGHGNLQVPLGTPPQDILGVSPAQVVPSVLDQHWEPFHVPQSHIMENVAQEMP
VQIPVPDLLLNPAPGAPIVTAAPSQLFQQFPRDFDITIYYRGKEVLQSTVSNSLGCQLYY
DEENGGFAQLQPVKFPSTEEINDFQQKRFTNCLLSNVAGGLLLEHKNGDLFGKRLGKCQV
FWVGSEASENEGSQKLNRNEEIKLFSLKNFLIELIDFTQQKRGVPQCSIWLCFGQRFELE
TKKKKLILVKVVPKLCTLLIEKAHQGGASSLTSENVSLQISNSSNTSSIENFMALVNELG
SMEWS
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atgaacaaccagaaaccacagttcagaccctggctaatccagcaggtgaacggcggctgt
taccacgggctgtgttggctggacctcaacaaggcgatattccgaattccctggaaacac
gccggcaggcaggacctgtgtgagaatgattacagcatcttcaaggcttgggccattgtg
agtgggaaattcactgaaggtcctcgaaaatggaaaactaacttccggtgcgccctcaac
agtaatgattcctttactttgattgatgacaattcaaaggagtcttcagacccacataaa
gtctacgccatcaccaaccagaaggccaatgcagcacctaatcttctgcaggaggatgac
aacctagaatcaagactctacatcagtcctgagaccagcccggcccagcccgacttcaca
ctctacaacccccatcagtcctttgaacttcaggtggatgaatgcattccacattttgga
ttaatgaatctgacggacggtcttgcagaccaagtggctcctgacccattaaatgcagtt
ggcttctttagcccgatgatgaacggacacggcaatctacaggtgcctctgggcacccct
ccccaggatattctcggtgtgtccccagcacaggttgttcccagtgtattggaccagcac
tgggagcctttccatgtcccacagtcccacataatggagaatgtggcccaggagatgcca
gtccagattcctgttccagatctcctgctgaatccagctcccggagcaccgatcgtgact
gcagccccttctcaactcttccaacaatttccgagagattttgacattaccatttactac
cgcggcaaagaagtccttcaaagcacggttagcaacagcctgggctgtcagctgtattac
gatgaagagaatgggggatttgctcagctacagcctgtcaagttcccaagtacagaggag
ataaatgatttccaacagaaaaggttcaccaattgcctcttgtcaaacgtggcaggaggc
ctccttctggagcataagaacggagatcttttcggcaagagactggggaagtgccaagtc
ttttgggttggatcagaagcatcagagaacgagggttcacagaaactgaaccgaaatgag
gagatcaaactattcagcctgaaaaattttttaattgaattaatcgacttcacacagcag
aaacgtggagtgccacagtgctccatctggctgtgctttggacaacgattcgagttggaa
actaagaagaagaagctcatcctggtcaaggttgttccaaaactgtgcaccttgctgatc
gaaaaggcccatcaaggtggagcatcctcactaaccagtgagaatgtcagtctgcagatc
tccaacagttccaacacgtcctccatcgagaacttcatggctttagtcaatgaattggga
agcatggaatggagctag
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