Scyliorhinus canicula (smaller spotted catshark): 119972244
Help
Entry
119972244 CDS
T11175
Symbol
seh1l
Name
(RefSeq) nucleoporin SEH1 isoform X1
KO
K14299
nucleoporin SEH1
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Pathway
scau03013
Nucleocytoplasmic transport
scau04150
mTOR signaling pathway
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
119972244 (seh1l)
09130 Environmental Information Processing
09132 Signal transduction
04150 mTOR signaling pathway
119972244 (seh1l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scau03019
]
119972244 (seh1l)
04131 Membrane trafficking [BR:
scau04131
]
119972244 (seh1l)
Messenger RNA biogenesis [BR:
scau03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
119972244 (seh1l)
Membrane trafficking [BR:
scau04131
]
Autophagy
Other autophagy associated proteins
SEACAT/GATOR2 complex
119972244 (seh1l)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_THOC3
Beta-prop_WDR5
WD40
Beta-prop_IFT122_1st
WD40_Prp19
Beta-prop_WDR3_1st
Beta-prop_EML_2
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
Beta-prop_WDR3_2nd
Beta-prop_RIG_2nd
WDR90_beta-prop_4th
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_EIPR1
ANAPC4_WD40
Beta-prop_TEP1_2nd
Beta-prop_Vps41
EIF3I
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR35_TULP_N
Beta-prop_WDR36-Utp21_2nd
Beta-prop_IFT140_1st
Beta-prop_TEP1_C
Motif
Other DBs
NCBI-GeneID:
119972244
NCBI-ProteinID:
XP_038664566
LinkDB
All DBs
Position
10:16796533..16830179
Genome browser
AA seq
425 aa
AA seq
DB search
MFVARSIAADHKDLIHDVSFDFHGRRMATCSSDQSVKVWDKGESGEWHCTASWKTHSGSV
WRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVK
FAPKHMGLVLATCSADGVVRIYEAPDVMNLSQWSLQHEISCKLNCSCISWNPSSSRSHPP
MIAVGSDDSSTNVGGKVQVYEYNENTRKYAKAETLITVTDPVHDIAFAPNLGRSFHILAV
ANKDVRIFTLKPLRKELSGSGGPTKFEIQTVAQFENHNSQVWRVSWNITGTVLASSGDDG
CVRLWKANYMDNWKCTGILKGDGSPVNNALLQQPLGIVNSSSVFGSSSSQNTVNGTSSGG
RYFFPPSDHARAGSRWSSNAQLLPLPLPMAEQSCDADTTHLQYRNPHSRYSCRTLNSLPE
NEGVQ
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atgttcgtggcccggagcatcgcggccgatcacaaggacctgatccacgatgtttccttc
gacttccacgggcggaggatggcgacttgctccagcgatcagagcgtgaaggtgtgggac
aaaggtgaatctggggagtggcactgcacagcaagctggaagacacacagtggatcagta
tggcgagtaacatgggcccaccctgaatttgggcaagtgttagcttcctgctccttcgat
cggacagcagctgtatgggaggagatagtgggcgagtctaatgataaactacggggacag
agccattgggtgaagaggactacacttgtggacagcagaacctcggtgactgatgtgaaa
tttgctccgaaacacatgggtttggttctagccacctgttctgcagatggtgttgtgcga
atctacgaggccccagacgtcatgaacctcagtcagtggtcattgcaacatgagatctcg
tgcaaattgaactgcagctgtatttcctggaacccttcaagttcccgttctcatccccct
atgatagcagtgggaagcgatgacagcagcacaaacgtaggggggaaagtgcaggtttat
gaatacaacgaaaacaccaggaagtatgcaaaagctgaaaccctaattacagtcaccgat
ccggtgcatgatattgcatttgctccaaaccttggaaggtctttccatatccttgcagta
gcaaataaagatgttcgaattttcacactaaaacctttaagaaaagaattaagtggttcg
ggagggccaacaaaatttgaaattcagacagtggcccagttcgaaaaccacaattcgcag
gtatggcgtgtgagctggaacatcactggtacagtcttggcatcttcaggagatgatgga
tgtgtcagattatggaaagctaattatatggacaattggaaatgtactggcatattgaaa
ggagatggaagtcctgtaaataatgccttgctccaacagccattgggaattgttaattct
tcctcagtatttggcagttcgtcctcacagaatacagtgaatggaacatcttctggagga
aggtatttctttcccccttcggaccatgctcgggctggatcaagatggtccagtaatgcc
cagcttcttcctcttcctcttcctatggcagaacagtcttgtgatgctgatacaactcac
cttcagtatcgtaaccctcacagtcgatactcctgcagaactctcaattccttgccagag
aatgagggggtgcaataa
DBGET
integrated database retrieval system
