Scyliorhinus canicula (smaller spotted catshark): 119972299
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Entry
119972299 CDS
T11175
Symbol
col22a1
Name
(RefSeq) collagen alpha-1(XXII) chain
KO
K16630
collagen type XXII alpha
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
VWA
VWA_2
Laminin_G_3
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
119972299
NCBI-ProteinID:
XP_038664716
LinkDB
All DBs
Position
10:34593586..34969480
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AA seq
1540 aa
AA seq
DB search
MVLRAMSRFSFIIIILSLWAGDGANAERAGCKNVHYDLVFLLDTSYSVGKENFEKVRQWV
ANLVGTFDIGPDKTRVGVVSYSDKPYTEFNLGAYQNIEDIKQAAASIRYRRGNTVTGEAI
GYVTLNSFSQQAGGRPNDPNIQKVAILLTDGRSQDEVLPNATVAHSAGIRLFAVGVGDAL
KEELEEIASEPKSAHMFHVTDFNAIDKIRGILRQRLCQNVLCPNLKLAGSQYKLQNKVSA
NIPGFDLMEQFRVKSIIGTKDGGFVRLGTMPIVQMTKDVFPQGLPDEYAFVATFKFRKAS
RREDWYIWQIIDKYGIPQVSIRLDGENKAVEYNAVGLRKDAVRTVFRNREVSGLFDRNWH
KMALSIQTSSVSLYIDCKLIETLPMEERENINIRGKTVIGKRLYDSVPIDFDLQRIVIYC
DAKDTELESCCDLPSNPCQITLATQVPQVEISTTPQPPAEVDSSKTINCSCHKGEKGDLG
LPGFQGPRGTKGDTGAYGPKGEKGEPGRISSTSQGKGEKGDQGYPGEQGFKGVAGTPGVK
GELGQKGFGGEKGVRGFDGFPGKIGLPGEVGATGSPGVAGIKGEKGEAGPPGYLGSEVEF
GGLKGEPGRPGPRGLPGLTGPPGPLGRPGLDGNAGKPGLQGQRGRKGDRGLPGEQGIIGY
PGMKGEPGFIGPTGRPGEQGLPGEIGFPGKPGPIGKPGAPGIDGKNGFPGPPGAEGQAGE
HGLDGIPGKPGDMGESGLPGITGPSGQKGETGLPGSPGLPGSRGMKGEPGEAGKQGSVGP
KSDKGEKGNEGSVGPPGSPGLPGTDLDGAKGEKGGAGEPGEPGSHGIPGASGPAGHSGPK
GQQGDQGSAGVPGEKGEMGIIGRSGPTGPPGVPGNEGVPGVAGPPGSKGEKGGAGTDGEP
GLPGIPGDTGPAGVPGRAGEGKIGKPGQPGTPGLAGLPGPKGDLGDPGLPGLPGDRGPPG
EGTAGTPGLAGQPGERGHPGPRGTPGTAGQPGNDGLQGLRGDPGPPGEPASLPLISRGQI
EYMVQDLCTSCPVGPPGLQGLPGLRGSKGHAGPVGKDGKDGLMGEQGPPGPPGPQGPAGT
VGSKGDRGLPGSSGGKGEQGSPGLPGYPGPPGTAGQPGADGIPGPPGTPGLRGEKGKEGT
RGNQGPAGLLGPPGLAGNDGKDGKPGPAGEPGRPGNPGPPGRNGLRGIPGFKGPKGSSGS
VGLQGEPGMVGPPGQPGSYGKDGEQGPPGPQGPPGFRGDQGKSGPPGPEGKSGIPGLQGS
KGSKGTNGEPGFPGPQGIPGSQGQPGETGNPGKTGSPGKSGAQGPKGERGDRGIKGEKGI
PGEKGQSGDPGLPGIKGHTGIMGPVGPPGERGSVGSPGQLGPPGIAGERGEPPSSEQLRR
LIREELSKQLDVRLSYLMSQFQPTSVKAPPGKPGPPGPPGMDGFPGRPGIPGEPGPSGQH
GSEGPGGPMGPKGDRGTKGGKGETGVGQRGDPGSPGPAGTPGTPGYGKDGIPGTPGPAGE
SGLPGGIGPQGPPGQNGVCDLAQCAYYASLASRPSNQKGP
NT seq
4623 nt
NT seq
+upstream
nt +downstream
nt
atggtccttcgagctatgtctcgattttcatttatcatcataattctctcgttatgggct
ggagacggagcaaatgcagagagagcaggctgcaagaatgtccactatgacctggtcttt
ctgctggacacatcctacagtgtgggcaaggagaacttcgaaaaagtcaggcagtgggtg
gccaatttggtggggacgtttgatattggtccagataagacgagggtaggagtcgtaagc
tacagcgacaagccttacacggagttcaacttgggcgcataccagaacatagaagatatc
aagcaggctgcggcaagcatcagatatcgccgaggaaatactgtaacaggggaggccatt
ggctacgtcaccttgaatagcttctcacaacaggcaggcggaagacccaatgacccgaac
attcagaaagtggcaattctcttgacagatggcagaagtcaggatgaagtgttacccaat
gccacagtggctcactctgctggcatcaggctttttgccgtgggtgttggtgacgccctt
aaagaggaactggaggagattgcctcagaacccaaatcagctcacatgttccacgtgacc
gattttaatgccattgacaagatccgaggaatactgcgtcaaagactgtgtcaaaatgtg
ctgtgtcccaatctgaaattggcaggcagtcaatacaaactacaaaataaagtttcagct
aacatcccaggttttgacctgatggagcagttccgtgtgaaaagcattatcggaacgaaa
gatggaggatttgttcgacttggaacgatgcccatcgttcagatgacaaaagatgtgttt
cctcaaggcctacctgatgaatatgcttttgttgcaacattcaagttccgaaaagcttca
cgaagagaagactggtacatctggcaaattattgacaaatatgggattccacaggtttcc
attcgattggatggtgagaacaaagctgtggaatacaatgcagttgggctgcggaaggat
gccgtgaggactgttttcagaaaccgagaagtcagcggcttatttgatcgcaattggcac
aagatggcactaagcattcaaacgagcagcgtctctctctacattgactgcaaactgatt
gaaacgctgccaatggaagaacgggagaacatcaatattcgagggaaaacagtaattggc
aaacgcctgtatgatagtgtcccaattgattttgatcttcaacgaattgtcatttattgt
gatgccaaggatacggaactggagagctgctgtgatcttcctagcaacccatgtcagatt
acactcgccactcaagttcctcaagtggagatctcaacaacaccacaaccacctgctgag
gtggacagttcaaagaccattaactgttcctgccataagggagagaagggcgatcttggt
ctacctggttttcaaggacccagaggcacaaagggtgatacaggagcttatggtcccaaa
ggagaaaaaggagaaccaggcagaataagctctacttcacaaggaaaaggtgaaaaggga
gaccagggttatccaggagaacaaggctttaaaggcgtcgctggaacacctggtgtcaaa
ggtgaacttggccagaaaggatttggtggagagaagggggttcgtggatttgatggattt
cctggaaaaataggtcttcctggagaagtgggtgcaactggtagtccaggtgttgctgga
ataaagggagaaaaaggagaagctggacctccaggttatctggggagtgaggtcgagttt
ggtggtttaaaaggagaaccgggtcgaccaggacctcgtggccttccgggcttgacaggt
cctccagggcctttgggtcgtcctggtctggatggcaatgctggcaaacctggattacaa
ggtcaaaggggaaggaagggcgatcgggggctgcctggtgagcagggaatcattggatat
ccgggtatgaaaggagaacctggtttcattggaccaactggacgtcctggagaacaggga
ttgccaggtgaaattggctttccaggaaaaccaggcccaattggaaaaccgggcgcgcct
ggaatagatgggaaaaatggcttccctggacctccaggagctgagggccaagcaggagag
cacggattggatggtatccctggaaaacctggtgacatgggagaaagcggtttaccaggt
atcacagggcccagtggacaaaagggagaaactggtcttcctggatcacccggattacct
ggttcaaggggaatgaaaggagagccgggagaagcagggaaacaaggttcagttggccca
aaatcagacaagggtgaaaaagggaatgagggatcagtcggacctcccggctctccaggt
ttaccagggacggatttggatggagcaaaaggagagaaaggaggtgcaggagaaccagga
gaacctggttcccatggaataccaggtgcaagtggacctgcaggacattcaggcccaaag
ggtcaacagggtgatcaaggctctgctggtgttcctggggaaaagggtgaaatgggtatt
attggaagatcaggcccaactggtccacctggcgtgccaggaaatgagggtgtcccagga
gttgctggtcccccaggcagcaaaggtgagaaggggggagctggtacagatggtgaacca
gggttacctggaattcctggtgataccgggccagctggagtgcctggacgagcaggagaa
ggcaaaattggaaaaccgggacagcctggtacacccggtttggcaggactccccggacca
aagggtgatctaggggatccgggtttgccagggttaccaggagacagaggacctccagga
gaagggacagcaggaacaccaggccttgcaggacaacctggtgaacgtggccatccgggt
ccaagaggcacgcctggaaccgcgggccagcctgggaatgatggtttacaaggccttcga
ggcgatccaggacctccaggagaacctgcatcattacctcttatttcaaggggacagata
gaatacatggttcaggacttgtgcaccagctgcccagtcggtccacctggactccaaggt
ctaccaggtttgagaggaagcaaaggtcatgcaggtcccgttgggaaagatggaaaagat
ggcctaatgggtgagcaaggaccaccagggcctccaggaccacaagggccagcaggaaca
gtgggaagcaaaggagatcggggtttgcctggttcatctggtggaaagggtgaacagggc
agtccaggactgccaggttatcctggaccacctggaactgccggccaacctggtgctgat
ggtattccaggacctcctggtacaccaggcctgcgtggagagaaggggaaggaaggcaca
cgaggaaatcaagggcctgccggattgttaggaccacctggtcttgcaggaaatgatgga
aaagatgggaagccagggcctgcaggggagccgggcaggccaggtaaccctgggcctcct
ggcaggaatggactccgaggaatccctggttttaaaggtccaaaaggttcttctggctca
gttggcctacaaggagaaccaggaatggttgggccaccaggtcagccaggttcatatggg
aaagacggtgaacaaggacctccaggacctcagggtccacccggtttcagaggcgatcag
ggtaaaagcggtccgcctggacccgaaggaaagtctggtatcccaggtctccagggatca
aagggttctaaaggaacaaatggagagccaggttttccaggaccccagggtataccagga
tcacaaggacagccaggagagacggggaacccaggaaaaaccggatctccaggcaaatca
ggtgctcaggggcccaaaggagagaggggcgatcgaggcatcaaaggtgaaaaaggaatc
ccgggagaaaaaggacaatctggtgatccagggcttcccggtataaaaggacacactggg
ataatgggtccagtggggcctccaggagaaagaggttcagttggatcaccaggacaatta
ggtcctcctggtatagctggagaaagaggtgaaccaccatcctctgagcaactgagaaga
cttatacgggaagagctgtcgaagcaacttgatgtgcggctgtcctacctcatgtctcag
tttcaaccaacatctgtgaaagcaccacctgggaagccagggcctcctggcccaccaggg
atggatggtttccctgggaggccaggtatcccgggagaacctggaccatctggacaacat
ggctccgaaggacctggtgggccaatgggtccaaaaggtgacagaggcactaagggtgga
aaaggagaaactggtgttggacagaggggtgatcctggttcaccaggccctgctggtacc
cctggtacacctggctacgggaaagatggaattcctggtacccccgggccagcaggagag
tctggcctacctggtgggataggccctcagggaccccctgggcagaatggagtgtgtgat
ctggctcagtgtgcttactacgcaagccttgccagccggccgtccaaccaaaaaggacct
tga
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