Scyliorhinus canicula (smaller spotted catshark): 119972514
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Entry
119972514 CDS
T11175
Symbol
rb1cc1
Name
(RefSeq) RB1-inducible coiled-coil protein 1 isoform X1
KO
K17589
RB1-inducible coiled-coil protein 1
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Pathway
scau04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
119972514 (rb1cc1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
scau01009
]
119972514 (rb1cc1)
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
scau04131
]
119972514 (rb1cc1)
03029 Mitochondrial biogenesis [BR:
scau03029
]
119972514 (rb1cc1)
Protein phosphatases and associated proteins [BR:
scau01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
119972514 (rb1cc1)
Membrane trafficking [BR:
scau04131
]
Autophagy
Autophagosome formation proteins
ULK complex
119972514 (rb1cc1)
Mitochondrial biogenesis [BR:
scau03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
119972514 (rb1cc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG11
ATG17_like
TBK1_ULD
ubiquitin
Motif
Other DBs
NCBI-GeneID:
119972514
NCBI-ProteinID:
XP_038665273
LinkDB
All DBs
Position
10:complement(92028013..92311158)
Genome browser
AA seq
1597 aa
AA seq
DB search
MKLYVFLVNTGTTLTFDTELAVQTVADLKHAIQAKYKIATQHQVLVVNGGECMVAERRVC
SYSAGTDTNPIFLYNKEMILCDRSPTIPKTTFSAENEMGLKVEESLMMPAVFHTVASRTQ
LAVEMYEVAKKLCSFCERLVHDEHLQHQGWAAIMANLEDCTHSFQKLLTKFENAYNNYER
SVEDIKQKLTNLGTAVLVMAKIPLLECLTRHCYRECQERLKLPTEKESPEEETEEDRSSD
SVLCSVKPAVHRKLSSSSVSFEHSVQNSVVQQDEKDNETSEERILKTAAEEEFKGEMDDQ
TFFNVSLLDWINVQDRPNDVESLVRKCFDSMNRLDPEILQPFLTDCRETIAKLDNQNMKA
IKGLEDRLYALDQMIASCNRLVNEQKELAQGFLANQKRAENLKDPSVLPDLCLSHANQLM
IMLTNHKKLLDIKQKCTTAKQELANNLQVRLKWCCYVMLHADQNGEKLQALLRLLTELQE
RVRIVEALSTVPQMYCLAVVEVVRRKMFTKHYREWASALVKEGKQLYEAERAKRESFGKL
FRRSFLRNRLFKGLDSWPPSSFCTYKPRKFDFELPEVSLADLQFLQSCCPSEVQPFLRIP
TLCDFEPLHQHIQILRNLVRAAQSLDEMSQTITDLLTEQKVSLDQPTLTTATTHRLESTI
GTKTTSSRATSTLSLQGSICPSANAPASLEELSPDSIDAHTFDFETIPHPNLEQVLKQGS
IDMDSLAESPESDFVSAVNEFMIEENSTSPNLNSDPQSPEMMLESLYSSVINAIDNRRMQ
DTTFGANEDSKEVAILKVHIEKYRLITEMSQMHFTNIKKDLTHFRALVQKEQCDFSSSMK
NVSEELRSIIETVKCRVEAGAKENYQQKLEILRKDHEDQIDKWNIKVVTAQQNAEKLKKD
LLELENGIKEKDYEISTTRTKNETLLCLHVSKDKEIHDLVEYRKKLESEIQELKQSKESF
LEELNRLNIKADQKMECLREELQDLEQNHLKDLEDDLKARHQQEMERLVGDHSSQQEQIL
RENEARLDHLQQSFSIKLQEREQELNELKVKVSELSDCRCKLEVELALKETEIEEIKQCL
KESQVQQEEITKCHVMKETEKYSEEITDLKHQLQLKLEEYNVGLAEEKTLMTIEKDQCIS
ELLNRQEEEKSLLKAELSKFDTIRQQALDVEVTLKGQVEELRTKLEECLKTIETQKEDMV
SEKQRISFELEAKYEATIRGLQEEKEQLNMLSQERAEFVGIKMHEDCERKRRALEQELLI
SQQLESQFEEQNRTERKVPLSSTSVSWSPPPSAIVDLTGKFQEEKANLLDQLEKRNEELQ
SLKTSLIAEQQTNFNTVLTREKMKKEQIINELNDKLKKLTQQQEKDRVLIETLSADRATL
LQEKKKLDEELNRLRSNVLVCSAFSLPGTSGAEASAVSGSDIPFDSERLAPVTAAVEDGR
IDSAMEASTMAVRETIQMSEEKHRIMILERTLQMKEEENKRLNQRLMSQSMSSVSSRHSD
KIAIRDFQVGDLVLIILDERHDNYVLFTVGPTLYFLHSESLGALDLKPVPGSSRRPWVLG
KVMEKEYCQAKKAQNRFKVPLGTKFYRVKAVPWNKKV
NT seq
4794 nt
NT seq
+upstream
nt +downstream
nt
atgaagttgtatgtatttctggttaacactggaactacccttacatttgacacagaactt
gctgtacagactgttgcagatcttaaacatgccatccaagctaaatataagattgcgacg
cagcatcaagtattggtcgttaatggaggagaatgtatggttgccgagaggcgtgtttgt
agttacagtgctgggacggatacaaatcccatatttttatacaacaaagagatgattctg
tgtgaccgctcaccaactatacccaagacaacattttctgctgaaaatgagatggggctg
aaggtagaagagtcacttatgatgccagctgtatttcacacagtagcctctcgaactcag
cttgctgtggagatgtatgaagtagcaaagaagctttgttcattctgcgaaagattggtc
cacgatgagcaccttcagcatcaaggttgggctgccattatggctaatttggaggactgc
acccattcttttcaaaagctgctgacaaagtttgaaaatgcatacaacaattatgaacgt
tctgtggaagatattaagcaaaaacttacaaacctaggcacagctgttttggtaatggct
aagataccactgttggagtgcctgaccagacactgttaccgtgaatgtcaggaaagattg
aaattacctacagaaaaagaaagccctgaagaagaaactgaagaggataggtccagtgat
tctgtactttgttctgttaaacctgcagttcacaggaaattgtcctctagttccgtatca
tttgaacattctgtacagaatagtgttgttcaacaggacgaaaaggacaatgagaccagt
gaagagagaattctgaagactgcagcagaagaagaatttaaaggagaaatggatgaccaa
actttctttaatgtctctttattggactggattaatgtacaggatagaccaaatgatgtg
gaatcactcgtcaggaaatgctttgattcaatgaaccgacttgatccagaaattcttcag
ccatttttaacagactgtcgtgaaacaattgccaaacttgataatcagaacatgaaggca
attaaaggacttgaggaccgcctatatgctctggatcaaatgatagccagctgtaacaga
ctggtgaatgaacaaaaggaattagctcagggatttctagctaatcagaagagagctgaa
aacctgaaagacccatctgttcttcctgatttatgtctgagtcatgcaaatcagttaatg
attatgttaacaaaccacaaaaaactgctggatattaaacagaaatgtactactgcaaaa
caagagcttgcaaacaatttgcaagttagattgaagtggtgctgttatgtgatgcttcac
gcagatcaaaatggtgaaaaactccaggctttgctacgacttctgacagaactgcaagag
agagtccgaattgttgaggcacttagcactgttcctcaaatgtactgcctagctgttgtt
gaggtagtaaggcggaaaatgttcactaaacattacagggagtgggccagtgctcttgta
aaagaaggaaagcaactctacgaagctgaacgagcaaaaagggaatcatttggaaagctg
tttagaagatcatttcttagaaatcgtttgtttaaggggcttgactcatggccgccatca
tccttttgtacatacaagccacgaaagtttgactttgagcttccagaggtatctttagcc
gatctgcagtttctgcagtcatgttgtccttcagaagttcagcctttcctcaggattcct
acattgtgtgactttgagcccttacaccagcatattcaaattcttcgcaatttggtcaga
gctgctcagagtttggatgaaatgtcacaaactatcaccgacttactgactgagcaaaag
gtgtcccttgatcaaccgactttaacaacagcaacaacacacaggctggaaagcacaatt
gggacaaaaactacctcttctagagccacatctacacttagccttcagggttcaatctgt
ccatctgctaatgctcctgcctctttagaagagttatcccctgatagtattgatgcccat
acgtttgattttgaaactattcctcatccaaatttagaacaagttctgaaacaaggatct
atagatatggactctttggcagaaagtccggagtctgattttgtatcagctgtaaatgaa
ttcatgattgaagagaactcaacctcgcccaacttgaatagtgatccacaaagtcccgaa
atgatgctagaatcattatattcttcagttattaatgctattgataatagacgtatgcaa
gatacaacctttggtgcaaatgaggactctaaagaagttgcaattctaaaagtgcatata
gagaaatacaggcttatcactgaaatgtctcagatgcattttacaaacattaagaaggac
cttacccatttcagagcacttgttcagaaagagcagtgtgattttagtagttccatgaaa
aatgtgagtgaagaattgagaagcataatagaaactgtaaaatgtagggttgaggcggga
gcaaaggaaaattatcaacaaaaattagagattttgcggaaggatcatgaagatcaaata
gacaaatggaatataaaggtggtcactgctcagcaaaatgcagaaaagctgaaaaaggat
ttgttggagcttgaaaatggtataaaagagaaggattatgagatttctacgacaaggact
aaaaatgaaaccctcttgtgtttacatgtgagtaaagataaggaaatacatgacttggtg
gaatatcgaaaaaaactagagtcagaaatccaagaactcaaacaatcgaaagagagtttt
ttggaagaattaaacagactaaacataaaggctgatcagaagatggaatgtttaagagaa
gaacttcaggatctcgaacaaaatcatctgaaggatcttgaagatgacctaaaagccagg
catcaacaggaaatggaaaggttggtgggtgatcacagtagtcagcaagaacaaatttta
agggaaaatgaagcaaggttggatcatttgcagcagtctttttcaataaagctccaggag
cgggaacaagaactgaatgaacttaaagttaaagtatccgaactttctgactgtaggtgc
aagctggaagttgaattggctttgaaggaaactgaaattgaggaaataaaacagtgttta
aaagagagtcaagtgcaacaagaggagatcacaaaatgtcatgtcatgaaagaaactgag
aaatatagtgaagagataactgacttgaaacaccagcttcagcttaaacttgaggagtac
aacgtggggcttgcagaagaaaaaacactgatgaccatagaaaaagatcagtgcatttct
gagctattaaacaggcaagaagaggagaagtccttacttaaagcagagctaagtaaattt
gatacaatacgtcagcaagcactcgatgtagaagtaacattaaagggacaagttgaagaa
ctccgcacgaagttggaagaatgtttgaaaacaatagaaacccaaaaggaggacatggta
tctgaaaaacagagaatttcctttgaattagaagcaaaatatgaagcgactattcgtggt
cttcaggaggagaaggaacaactaaatatgttgagtcaggagagagcggaatttgttgga
attaaaatgcatgaggattgtgaacggaaaagacgagcactagagcaagaattgctaata
agtcaacagcttgaaagtcaatttgaagaacaaaatagaactgagaggaaagttccgctt
tcatccacatcagtgagttggagtccaccacctagtgctattgttgaccttacagggaaa
tttcaagaagagaaggccaacctcctagaccaattagaaaaaaggaatgaagaacttcaa
agccttaaaacatcactaatagctgaacaacagaccaacttcaacactgttctaactcgt
gaaaaaatgaagaaagaacaaattatcaatgagctgaatgacaaactgaaaaagctaacc
cagcaacaagaaaaggatagagttttgatagaaacgctctctgcagatagagctactttg
ctacaagaaaagaaaaagcttgatgaggagcttaacagactgcgaagtaatgtgctggtt
tgttctgccttttcattacctggaacgtctggagctgaggcttctgctgtttctgggtct
gacattccatttgattcggaaagacttgcacctgttactgcagcagtggaagatggcaga
atagactctgcaatggaggcaagcaccatggctgtacgtgaaaccattcaaatgtctgaa
gaaaaacatcggattatgattttagaaagaacattacaaatgaaagaagaggagaataaa
cgtttaaatcaaagattgatgtctcagagcatgtcctctgtatcttctagacattctgac
aaaatagctattcgagatttccaagttggggatttagtgcttattatcttggatgaacgt
catgataactacgttctattcactgttggcccaaccctttacttcctgcattcagaatca
ttgggagcattggatcttaaaccagttccaggttcttcgaggagaccttgggtacttgga
aaagtgatggaaaaagaatattgtcaagcgaaaaaggctcaaaacagatttaaagttcct
ctgggaacaaaattctacagagtgaaagcagtgccctggaacaagaaagtataa
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