Scyliorhinus canicula (smaller spotted catshark): 119972725
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Entry
119972725 CDS
T11175
Symbol
vps41
Name
(RefSeq) vacuolar protein sorting-associated protein 41 homolog isoform X1
KO
K20184
vacuolar protein sorting-associated protein 41
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Pathway
scau04140
Autophagy - animal
scau04142
Lysosome biogenesis
scau04148
Efferocytosis
scau05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome biogenesis
119972725 (vps41)
04140 Autophagy - animal
119972725 (vps41)
04148 Efferocytosis
119972725 (vps41)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
119972725 (vps41)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
scau04131
]
119972725 (vps41)
Membrane trafficking [BR:
scau04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
119972725 (vps41)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_Vps41
Beta-prop_Vps41
zf-RING_Vps41
Clathrin
VPS18_solenoid_2nd
Beta-prop_HPS5
WD40_WDHD1_1st
zf_RING_Vps8_fungal
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_IFT122_1st
Beta-prop_THOC3
Vps39_1
zf_RING_Vps8
TPR_7
Beta-prop_EML_2
TPR_YpiA
zf-RING_5
VPS18_RING_C
CFAP251_N
Beta-prop_WDR3_1st
Beta-prop_WDR3_2nd
Beta-prop_RIG_2nd
Beta-prop_ACSF4
TPR_12
U-box_ZFPL1
Motif
Other DBs
NCBI-GeneID:
119972725
NCBI-ProteinID:
XP_038665865
LinkDB
All DBs
Position
10:154839398..155064262
Genome browser
AA seq
863 aa
AA seq
DB search
MVFHHTLDLCLLDGGQALRSWEETQNYEESTDESEEEESEEEPKLKYERLANGMTDILQK
DAASCMTVHDKFLALGTHQGKVYLLDVQGNVTQRFDISTVKVNQVSLDESGEHIGICSED
GKVQVVGLYTREGFHENFDCPIKIVALHPQFGRSSSKQFITGGNKLLLYERNWLNRWKTI
VLHEGEGTITNIKWRGNLVAWSNRVGVKIYDASSKQRITNISRDNINFRPDMYLCSLCWK
DNITLIIGWATSVKVCVVKERDPTDLRDLPTRYVEIVSAFESEFHISGLAPLGERLVLLM
YVKEMLEQTDKEHCARPRLDIIHHLPDSYEEISSDALSVRGFQENECRDYSLEHSDGESL
FYIISPRDIVVAKERDQDDHIEWLLGKKKYEEAMMAAEISQKNIKRHNILDIGRAYVNYL
VDKGDYHGAARKCQKILGKNMDLWENEVYRFKKIGQLKAISQYLPRGDLRLRPAIYEMIL
YEFLESDYEGFASLIREWPGDIYNNMTVVRSVLDHLDRAPSNRTLLTTLAELYTYDQRYD
KALEIYLKLRHKDVFQLIHKHNLFSSIKDKIVLLMEFDKEQAVNMLLDNEDKISIDKVVE
ELKDQPELQHVYLHNLFKRDHHKGQKFHEQQISLYAEYDRPNLLPFLRDSTHCPLEKALE
ICQQRNFVAETVFLLSRMGNSRRALQMITEELQDVDKAIEFAKEQDDAELWEDLISHSID
KPPFITGLLNNIGTHVDPILLIYRIKEGMEIPNLRDSLVKILQDYNLQILLREGCKKIIV
SDCLTLLKKMHKTQLRGVRVDEENICESCHSPILPADTAKTFNVVVFHCRHMFHKDCLPT
PGMQFCNICSAKRRGPAGGLSEA
NT seq
2592 nt
NT seq
+upstream
nt +downstream
nt
atggtattccatcacactcttgacttgtgccttctagatggtggacaagctttgaggagt
tgggaggagactcaaaactatgaagaatccacagatgaatccgaggaggaagaaagtgaa
gaggaaccgaagcttaaatatgaaagattggctaatggaatgacagatatcctgcagaaa
gatgcagcaagttgtatgactgtgcatgataagtttttggcactggggacacatcaaggc
aaagtctatttgctggatgttcaggggaatgtgacgcaacgctttgacattagcactgtg
aaggtgaatcaagttagcttggatgaaagcggagagcatattgggatttgttcagaagat
ggcaaggtccaggtggttggactgtacaccagagaaggatttcatgaaaattttgactgt
cctatcaaaatcgtggctcttcatccacagtttggcagatccagcagtaagcagttcatc
acaggaggaaacaagttgctgctgtatgaacgaaattggttgaaccggtggaaaacaatt
gtattgcacgaaggagaaggcaccataacgaatattaaatggaggggcaaccttgttgca
tggtcaaaccgtgtgggggtcaagatatatgatgctagctcaaagcagcgaatcacaaac
atatctcgagacaatataaattttcgtcccgatatgtacctctgcagcctctgctggaaa
gacaacatcacgctcattattggttgggcaacatctgttaaggtgtgtgtggtgaaggag
cgtgatcccacggatctaagggacttgcccactcgttatgttgaaatcgtgtcggccttc
gagtcagagtttcacatcagtggacttgcaccacttggcgagcgtctagttctcctgatg
tatgtgaaagagatgttggaacaaacggataaagaacactgtgcaaggcctcggcttgac
atcattcaccacttgcctgattcatatgaggagatttcgtctgatgctctatccgtaaga
ggtttccaagaaaatgaatgccgagactacagcttagaacactctgatggtgaatcgcta
ttttatatcatcagcccaagggacattgtagtggcaaaggaacgggaccaagatgaccac
attgaatggctacttggaaaaaagaagtatgaagaagctatgatggcagctgaaatcagc
cagaagaatataaaaagacataatatactggatattggcagagcctatgtaaactacctg
gtggacaaaggagactatcatggagctgcaagaaaatgtcagaagattcttggcaaaaac
atggatctctgggaaaatgaggtgtaccgatttaaaaagatagggcaacttaaagcaatt
agtcagtacttaccaagaggtgacctacgcttgagacctgccatatatgaaatgatcttg
tatgaattcctggagagtgattatgaggggtttgcatctttaatacgagagtggcccggt
gacatttataacaatatgactgtagtccgctctgtgttggatcatctggatcgggctccg
agtaacagaacgttgttgacaacgctcgcagaattgtacacctatgaccagcgttatgac
aaagctcttgaaatttacttaaagttgcgacataaagatgtcttccagctcatacacaag
cacaatctcttcagctccatcaaggataagattgttcttctcatggagtttgataaggag
caagcagttaatatgctcctggacaatgaagataaaatttcaattgacaaagttgtggaa
gagctgaaggatcaaccagaactgcagcatgtgtatttgcataacctgttcaagcgagat
caccataaaggacagaagttccacgagcaacagatcagcctgtacgccgaatatgatcga
ccaaacctgttgccattcctaagagacagcacccattgtccgctggaaaaagcccttgaa
atttgtcagcaacggaactttgtcgcagagaccgtctttctcttgagtagaatgggtaat
agtcggcgagcactccagatgataactgaggaactgcaagacgtagacaaagccattgag
tttgcgaaggagcaagatgatgctgaactatgggaggaccttatctcccattccattgac
aagccaccatttataactggattgttgaacaatattgggacccacgttgatcctatcctc
ttgatctaccgaataaaggaaggcatggagatccctaacctgcgggattcgctagtgaag
atccttcaagattataacttgcagattttgttgcgggaggggtgcaaaaagattattgtt
tctgattgtctgacgttgctgaaaaaaatgcataaaacccagctgagaggagttcgcgtt
gatgaagagaatatttgtgaatcatgtcattcacccatattgcctgcagacactgccaaa
acattcaatgtggtggtctttcactgcaggcacatgtttcacaaagattgccttccaact
cctggcatgcagttctgtaatatctgcagtgcaaaacgtcgaggacctgctggtggattg
agtgaggcttaa
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