Scyliorhinus canicula (smaller spotted catshark): 119972734
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Entry
119972734 CDS
T11175
Symbol
sptbn1
Name
(RefSeq) spectrin beta chain, non-erythrocytic 1 isoform X1
KO
K06115
spectrin beta, non-erythrocytic 1/4/5
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Pathway
scau04517
IgSF CAM signaling
scau04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
119972734 (sptbn1)
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
119972734 (sptbn1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
scau04812
]
119972734 (sptbn1)
Cytoskeleton proteins [BR:
scau04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Cross-linking proteins
119972734 (sptbn1)
Intermediate filaments
Intermediate filament-binding proteins
119972734 (sptbn1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spectrin
CH
PH_9
PH
CAMSAP_CH
SOS1_NGEF_PH
Motif
Other DBs
NCBI-GeneID:
119972734
NCBI-ProteinID:
XP_038665952
LinkDB
All DBs
Position
1:complement(238880404..239181440)
Genome browser
AA seq
2360 aa
AA seq
DB search
MTAIATDYDNIDIQQQYSDVNNRWDVEEWDNENSSARLFERSRIKALADEREAVQKKTFT
KWVNSHLARVSCRITDLYTDLRDGRMLIKLLEVLSGERLPKPTKGRMRIHCLENVDKALQ
FLKEQRVHLENMGSHDIVDGNHRLTLGLIWTIILRFQIQDISVESEDNKEKKSAKDALLL
WCQMKTAGYPNVNIHNFTTSWRDGMAFNAVIHKHRPDLIDFDKLKKSNAHYNLQNAFNLA
EQHLGLTKLLDPEDVSVDHPDEKSIITYVVTYYHYFSKMKALAVEGKRIGKVLDYAIETE
KMIEKYESLASDLLEWIEQTIIILNNRKFANSLVGVQQQLQAFNTYRTVEKPSKFTEKGN
LEVLLFTIQSKMRANNQKVYMPREGKLISDINKAWERLEKAEHERELALRTELIRQEKLE
QLARRFDRKAAMRETWLSENQRLVSQDNFGFDLPAVEAATKKHEAIETDIAAYEERVQAV
VAVARELEAENYHDIKRITARKENVYRLWEYLLELLRARRHRLEMNLNLQKIFQEMLYIM
DWMDEMKVLLLSQDYGKHLLGVEDLLQKHALVEADIAIRSDRVKVVNASAQKFASEGEGY
KPCDPQVIRDRVTHLDFCYQELCQLAAERRARLEESRRLWKFFWEMAEEEGWIREKEQIL
SSADYGKDLTSVIRLLSKHKAFEDEMSGRRGPLQQTIKEGEAMVAEEHFGSEKIKERIKD
IKEQWAHLEQLSAVQKKRLEEAANVHQFKADGDDIDVWMLDILRIVSSNDVGHDEYSTQA
LVKKHKDVGEEIASYRQIIDALHEQGQSLPDEYYKSPEIEGRLTDIEERYKELTELARLR
KQALQDALSQYKMFSEADACELWIDEKEQWLNSMEIPEKLEDLEVIQHRFESLEPEMNNQ
ASRIAVVNQIARQLIHSGHPSEKEIKAQQDKLNTRWSQFRQLVDQKKDALNSALSIQNYH
LECNETKSWIREKTKVIESTQDLGNDLAGVMALQRKLTGMERDLTAIEAKLDDLQKEAER
LAAEHPDQAHAIMSRLAEINDVWEEMKCTLKNREESLGEANKLQQFLRDLDDFQSWLSKT
QTAIASEDMPNTLAEGEKLLTQHENIKNEINNYEEDYQKMRDMGEMVTQGQTDAQYMFLR
QRLQALDTGWNELHKMWENRQNHLSQSHSYQLFLRDTKQAEGFLNNQEYVLAHTEMPTTL
EAAEAAIKKQEDFMTTMDANEDKINGVVETGRRLVSDGNIYSDKIQEKVDSIDERHKKNR
EAASELLMRLKDNRDLQKFLQDCQELSLWISEKMLTAQDMSYDEARNLHSKWQKHQAFMA
ELASNKEWLDKIDKDGMQLTAEKPDTEVVVREKLTALRHLWEELESTTQAKAQRLFDANK
AELFTQSCADLDKWLHNLEGQLQSDDYGKDLTSVSILLKKQQMLENQIEVRKKEVEELKG
QAKVLSQEGKDIDEVDSKRTIVEKRFLQLLEPLHERKNYLMASKEIHQFNRDLEDEILWA
EERMPLATSTDHGHNLQTVQMLIKKNQTLQKEIQGHKPRIDDIFERSQSMVTADSPSAKA
IQQRLSELRELWKLLSEETEKRHNRLVESHKAQQYYFDAAEAEAWMSEQELYMMSEEKAK
DEQSAVMMLKKHQILELAVEDYAETVHQLSKTSRALVADGHPESERISMRQSQVDKLYAG
LKDLAEERRGKLDERYRLFQLNREVDDLEQWIAEREVVAGSHELGQDYEHVTMLQERFRE
FARDTGNIGQERVDSVNRMADELINSGHSDAATIAEWKDGLNEAWADLLELIDTRTQILA
ASYELHKFYHDAKEILGRIQDKHKKLPEELGRDQNTVEALQRMHTTFEHDIQALGTQVRQ
LQEDASRLQAAYAGDKADDIQKREAEVLEAWKMLLDACEARRAKLFDTGDKFRFFSMVRD
LMLWMEDVIRQIETQEKPRDVSSVELLMNNHQGIKAEIDARNDSFTTCIELGKSLLARKH
YASEEIKEKLLQLTDKRKEMIDKWEDRWEWLRLVLEVHQFARDAGVAEAWLLGQEPYLSS
RELGQSVDEVEKLIKRHEAFEKSAATWDERFSALERLTTLELLEVRRRQEEEERKRQPSP
QPTPQPSDESESPLQEGAREGEHISQNGLPSDQESPRVSDTIVTSEMVNGATEQRTSSKE
PSPAASPTSDRKTKTSPLQSQSATLPVKSQETASAQMEGFLHRKHEWETHNKKASSRSWH
NVYCVINNQEMGFYKDAKNASSGITYHGEVPITLKEALCEIAVDYKKKKHVFKLKLSDGN
EYLFQAKDDEEMNSWIQAITSAVTTDKSEAIPSSQSTPAASRAQTLPASVVLTGESSPGR
REKDKEKDKEKRFSLFSKKK
NT seq
7083 nt
NT seq
+upstream
nt +downstream
nt
atgacagcaatagcaacagactacgacaacattgatattcagcagcagtatagtgatgtc
aacaatcgctgggatgtggaagaatgggacaacgaaaacagctctgccaggctgtttgaa
agatcccgtattaaagccttggcagacgagcgtgaagctgttcaaaagaagactttcaca
aaatgggtaaactctcacttggcaagagtgtcttgcagaatcacagatttgtacacagac
ctccgtgatggccggatgctgatcaaactactcgaggtgttgtcaggagaaagacttcca
aaaccaacaaaaggacgaatgcgaatccattgtcttgaaaatgttgacaaagcccttcag
ttccttaaagagcaaagagtacatttagaaaatatgggatcccatgatattgtggatgga
aaccatcgactgactcttggtttaatttggaccatcattctccggttccagatccaagat
attagtgttgaatcggaagacaacaaggaaaagaaatctgcaaaagatgccttgctgtta
tggtgccaaatgaaaacagcaggctatcccaatgtcaacattcacaactttaccaccagc
tggagggatggcatggcattcaatgctgttatacacaagcatagaccggacctgattgac
tttgacaagcttaagaagtcaaatgcacactacaatcttcagaatgctttcaaccttgca
gagcaacacctggggcttaccaagctgctggaccctgaagatgtcagtgttgatcaccct
gatgaaaagtcaattattacttatgtggtgacatactatcattacttctccaaaatgaag
gcccttgctgtggaaggaaagcgtattggaaaggtgcttgactatgcaatcgagaccgag
aaaatgatagaaaaatacgagtccctggcatctgacctgctggagtggattgaacaaacc
atcatcatcctgaacaatcgtaaatttgccaactcactggttggtgttcagcagcagcta
caagcattcaacacatatcgcacagtagaaaagccatcaaagtttacagaaaaaggaaac
ctggaagtattgcttttcaccattcaaagcaagatgagagcaaacaatcagaaagtgtac
atgccaagagaaggcaaactcatctcagatatcaacaaggcctgggaacgactggaaaaa
gctgaacatgagcgagaactggcattaagaactgagctgatcaggcaagaaaagctggaa
caacttgcacgtcgatttgatcgtaaagctgctatgagggaaacctggctaagtgaaaac
cagcggcttgtttctcaggacaattttggttttgatctcccagctgtggaagctgctact
aagaagcatgaagctattgagacagatattgctgcatatgaagagcgagtgcaggcagta
gtggctgtggccagggaacttgaagctgagaactaccatgacatcaagcgcatcaccgca
aggaaagaaaacgtctacaggctgtgggaatacttactggaattactgcgagctcgtcgc
catcgtttagaaatgaatctcaacttacaaaagatttttcaggaaatgctgtatattatg
gactggatggatgaaatgaaggttctactgctctcacaagactatgggaaacatttactt
ggtgttgaggatctcctgcagaaacatgcactggttgaagctgacattgctattcggtct
gacagagtgaaagttgtcaatgcctctgctcagaaatttgcttctgaaggagaaggttat
aaaccatgtgacccacaggtgattcgtgatcgtgtgactcacttggacttctgttaccaa
gagctctgtcagctggcagctgaacgaagagctcgtctggaagagtcacggcgcctctgg
aagttcttctgggagatggcagaggaagaaggctggatccgggagaaagagcagatactt
tcatcagctgactatggcaaggacctgactagtgtgattcgtctcctcagtaaacacaag
gcatttgaggatgaaatgagtggacggcgtggacctcttcaacaaactataaaagaaggt
gaagcgatggtagctgaggaacactttggatcagagaagattaaggaaagaattaaagac
attaaggagcagtgggcccatcttgagcagctgtctgcagttcagaaaaagcgattagag
gaagctgctaatgttcaccagtttaaggctgatggtgatgatattgatgtgtggatgtta
gacattctgcggattgtctccagtaatgatgttggtcatgatgaatactccactcaagcc
ttagtgaagaaacacaaagatgttggtgaggagattgctagctacagacaaatcattgat
gcactacatgaacaggggcaaagtttgcctgatgagtattataaatcaccagaaatagaa
gggagattgactgatattgaggaacgttacaaggagttaacagaactagcacggcttcgt
aaacaagccctccaggatgcactatcacagtacaagatgttcagtgaagcagatgcttgt
gaattatggattgatgaaaaggagcagtggctgaacagcatggagatcccagaaaaactt
gaagatctcgaggttatccaacataggtttgaaagtctggagccagaaatgaacaatcag
gcttctcgtatcgcagtggtgaaccagatagctcgtcagttgatccacagtgggcatcct
agtgaaaaggagatcaaagcacaacaagataagctaaatacaagatggagtcaattccgt
caactagtggaccaaaagaaagatgcactcaattctgcactcagtattcagaactaccac
cttgaatgcaatgaaacaaaatcctggattagggaaaagaccaaagtcattgaatccacg
caagatctgggcaatgatcttgctggtgtcatggccctccaaaggaaattaactggaatg
gaacgtgatttgacagctattgaagctaaattagatgacctgcagaaagaagctgaaaga
cttgctgctgaacatcctgaccaggcacatgctattatgagccgtcttgcagaaataaat
gatgtctgggaagaaatgaaatgtactttgaagaaccgagaagaatcacttggtgaagca
aacaagcttcagcaattcctgcgtgatttggatgacttccaatcctggctatcaaaaacc
caaactgctattgcttctgaagatatgcccaacaccctggcagaaggagagaagctactt
acccagcacgaaaacatcaaaaatgaaattaataattatgaagaagactaccagaaaatg
cgtgacatgggtgagatggtaacgcagggacaaacagatgcacaatatatgttcctacgt
cagcgtctgcaggctttggatactggatggaatgagctgcacaaaatgtgggagaaccga
cagaatcacctatcccaatcacattcataccaacttttcttaagagatacaaaacaagca
gaagggttccttaacaaccaggagtatgtgctggcacacactgaaatgcccaccacacta
gaggctgctgaagctgccattaagaagcaggaagacttcatgacgaccatggatgcaaat
gaagataagatcaatggagtggtagagacgggcaggagactagtcagcgatggcaatatt
tattctgacaagatccaggaaaaagttgactcaattgatgaaagacataagaagaaccgt
gaggctgccagtgaacttcttatgcgccttaaggacaatagagacctacagaagtttctc
caagactgccaggaattatccctttggatcagtgagaaaatgctcactgctcaggacatg
tcctatgatgaagccagaaatttgcatagcaaatggcagaagcatcaggcttttatggca
gagcttgcatcaaataaagaatggctggataaaattgataaggatggaatgcagctaaca
gcagagaagccagatactgaggtggtcgtgagagaaaaactgacagccctacgccatttg
tgggaagaactagaatctactacacaggccaaagctcagcgtctgttcgatgccaacaaa
gcagagctcttcacccagagctgtgctgatttagacaaatggctgcataatctggaaggc
cagctccagtcagatgattatggcaaggaccttaccagtgtctctattctactcaagaaa
caacagatgttagaaaatcagattgaagtgcgaaagaaggaggtggaggaactgaagggt
caggccaaggttttgagccaagaaggtaaagatattgacgaggtggatagcaagcgcaca
atagttgaaaaaagatttttgcagctactggaaccactacatgaaaggaaaaattacttg
atggcatctaaagaaattcatcaattcaacagagatctggaggatgagattttgtgggct
gaagaacgcatgcctcttgcaacatccactgaccatggtcacaacctccagactgtacag
atgctgatcaagaaaaaccagacccttcaaaaggaaattcaaggccataaaccacgtatt
gatgatatatttgagagaagccaaagtatggtaactgctgattccccaagtgcgaaggct
attcagcagagattatcagaattacgagaactttggaagttattgtctgaagaaacggag
aagcgtcacaatcgtctggtggagtctcacaaagcccaacagtactattttgatgctgca
gaggcggaagcctggatgagtgaacaggaattgtacatgatgtcggaagagaaagcgaag
gatgagcagagtgcggtgatgatgttgaagaaacatcagattttggagttggcagtggaa
gattatgctgagactgtgcatcaactttcaaagactagcagagctttggtagcagatgga
cacccagagagtgaacgtatcagcatgcgccagtcccaggtggacaagctttatgctggc
ttgaaagatttggctgaggagagaagagggaaactggatgagaggtaccgccttttccaa
ctaaacagggaggtggatgatttggagcaatggatagctgaacgtgaggtggtcgctgga
tcacatgaacttgggcaggactatgagcatgttacgatgctacaagagaggttccgtgaa
tttgcccgtgatactggtaatattggtcaggagcgagtcgacagtgtgaaccgtatggct
gatgagctgatcaactctggacattctgatgctgccacaattgctgagtggaaagatgga
ctcaatgaggcttgggcagatctccttgaacttattgacaccagaacacaaattttggca
gcttcttacgaattgcacaaattctaccatgatgctaaggagatccttggacgaattcaa
gataagcacaagaaacttccagaggaattaggtcgagatcagaacactgtggaagcattg
cagagaatgcacacgacatttgagcatgacattcaagctcttggtactcaggtaaggcag
ctgcaggaggacgcctctcgtctccaggctgcttatgctggtgacaaggctgatgacatt
cagaaacgtgaagcagaagtattggaggcatggaagatgcttcttgatgcatgtgaggct
cggagggcaaagctttttgataccggtgacaagttccgcttctttagcatggtgcgtgat
ctgatgctttggatggaagatgttattcgacaaattgagacccaggagaaaccaagagat
gtttcatcagtggaattgttaatgaacaatcaccaaggcatcaaagctgaaattgatgcc
cgtaatgacagtttcacaacgtgcattgaacttggaaaatctctcctggcaagaaagcac
tatgcatctgaagagattaaggagaagttgttgcaactaacagataagaggaaagaaatg
attgacaaatgggaggacagatgggagtggctcagactagtattggaagtacatcagttt
gcgagagatgcaggtgtggcagaagcctggcttttaggccaagagccatacctgtcaagt
cgagaattgggtcagagtgtggatgaggtggagaaactgatcaagagacatgaggcattt
gagaaatcggcagctacgtgggatgaaaggttttcagcattggagagactgacaacactg
gagttgcttgaagtacgtaggaggcaggaagaggaggagaggaagagacaaccatcacca
cagccaaccccacagccttctgatgagtctgaatcaccactacaggaaggagctagagaa
ggagaacatatttcgcagaatggattaccatccgatcaggaatccccacgggtgtctgac
acaattgtaacaagtgagatggtgaatggcgccactgaacagagaactagttccaaagag
cccagccctgcagcttcaccaacttcagatcgtaaaaccaagacctcacctttgcagtcc
caatctgctactttaccagtcaagtcacaagaaacggcgtcagcacagatggagggcttc
ctacatcgaaagcacgaatgggaaacacacaataaaaaagcatcaagcagatcttggcac
aatgtgtattgtgtgataaacaaccaggagatgggcttctataaagatgcaaagaatgca
agttcaggtatcacatatcatggtgaggtcccaattaccctaaaggaggcactgtgtgaa
atagctgttgactataagaagaagaagcacgtctttaaactaaagttgagcgatggcaat
gaatatctcttccaagccaaagatgatgaggaaatgaacagctggattcaagctatcact
tcagctgtgactacagataagagcgaggcaattccaagcagccagagtaccccagcagct
agccgtgcacagaccctgccagctagtgttgtgttgactggtgaatccagtcctggcaga
cgagagaaagataaagagaaagacaaagagaaaagattcagtctgtttagcaagaagaag
tag
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integrated database retrieval system
