Scyliorhinus canicula (smaller spotted catshark): 119972901
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Entry
119972901 CDS
T11175
Name
(RefSeq) transcription initiation factor TFIID subunit 4-like
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Pathway
scau03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
119972901
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
scau03021
]
119972901
03036 Chromosome and associated proteins [BR:
scau03036
]
119972901
Transcription machinery [BR:
scau03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
119972901
Coactivators
SAGA/TFTC/STAGA complex
119972901
Chromosome and associated proteins [BR:
scau03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
119972901
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
TAFH
Motif
Other DBs
NCBI-GeneID:
119972901
NCBI-ProteinID:
XP_038666374
LinkDB
All DBs
Position
10:6936182..7103675
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AA seq
738 aa
AA seq
DB search
MPTPEPASTARPPLAASAQPPAPGPSPAAAAANGLLNGSAAPAGPALKVVLLPERPPPQP
AGQSRPSPAAPLPSPAAAVPALTGNQLPVSRPPAATVQRITVSSPHVKTSQLGQTTVPIL
HNFQVPAGMVLARSDSGQLVLVPQKAIAQAKAWAQGTGSTSTAVATSSPLVRISTGQVTG
TQRIPNQVKPPAVQLKQLQAGGQTSATSQHITVMQPQTAGSVIAPKATSTVVQKQASVPA
DRSATVPIVQPSASPETLENVKKCKNFLATLIKLASSGSHSPQMSCNVKTLVQKLLDGKM
EVEEFTNQLYKELKSSPQPYLVPFLKRSLPALRRLMPNSQAFIQQCLQKPATPASTLAVV
SGASKQANPGQATKTMTVMSASQQAKVLQTLPSPQVVVQQSGVLIKSQGSTLPRTQTVTL
QRTPNHIIVPVSQNQVKETQAGAVTLVTKVSLAQVNKNPTSVLLQTSAGQVIKKEVGGAT
FRDEDDINDVASMAGVNINEENARILATNSELVGTVIRSCKDETFLSSVSLQKKALEIGK
KHGVTEVNSDVLNTISHATQEHLRELVEKLTVIAQHRMATYKDDDRYSLLNDTRSQLKFF
EQLDRLEKQRKDEDERETLLRLAKSRAKNEDPEQLRLKQRAKEMQQLELAQLQQREANLA
ALAAIGPRKRKTPDSPGLRTGNEGSSGSGGAPGGLRTMQARPYLRQRVTRVNLRDLILCL
EQEQATKHSLLLYRAYLK
NT seq
2217 nt
NT seq
+upstream
nt +downstream
nt
atgcccacccccgagcccgccagtaccgcgcggccgcccctggcggccagcgcccagccg
cccgccccgggcccgtccccggccgccgccgccgccaacgggctgctcaacggcagcgcg
gcgcccgccggccccgctctcaaagtggtcctgctgcccgagcggccgccacctcagccg
gctggccagtcccggcccagccccgcagcaccgctgccctcgcccgccgccgccgtgccc
gcgctcaccggcaaccagctgcccgtctcccggcctccggccgccaccgtccaaaggatc
accgtctcctccccgcacgtcaaaacctctcaactgggccagaccacagtccccatcctg
cacaacttccaggtgccagcaggtatggtgcttgctcgaagtgacagtggacagctagtg
ctagttccacagaaagccattgctcaggctaaagcctgggctcaaggaactggaagcacc
tcaactgcagtagcgacgagctcacccttggtccgaatttccaccggacaggtaactggg
acccagagaattcccaatcaagtgaagccccctgctgtccagctgaagcaattacaggct
ggaggccagacaagtgcgacatcacaacatatcacggttatgcagccgcagactgcgggt
tcggtgattgcaccaaaggccacatcaacagttgtccagaagcaagcatcggtgccagca
gaccgttcagccactgtgcccattgtacagcccagcgcgtcaccggaaactttggaaaat
gtgaagaaatgcaagaacttccttgcaacattaattaaattggcttccagtggatcccac
tcaccacaaatgtcatgtaatgtgaagactttagtgcaaaaactactggatgggaagatg
gaagtagaagaattcacaaaccagttgtacaaagaactcaagtcttcaccacagccttac
cttgtgccttttcttaagcgaagtttacctgccttgcggaggttgatgccgaactcccag
gctttcattcaacagtgcctacagaaacctgcaactccagcctctacccttgcagttgta
tctggagcatcgaaacaagccaacccagggcaggcaacaaagaccatgacagtaatgagt
gcttcacagcaggcaaaagtcctgcagaccttgccatcgccacaggtggtcgtccaacag
tccggagtacttataaagtcgcaaggaagcacgctgccaaggactcaaacagtgacgttg
caaagaacccccaaccatatcattgtgcctgtatcacaaaatcaggtcaaagaaactcaa
gcaggtgctgtaactttggtaacaaaagtatcgctcgcacaagtaaacaagaatccaaca
agtgttctactgcaaacctccgctggtcaagttatcaaaaaggaagttggaggtgcgact
ttcagggatgaggatgacatcaatgatgtggcctctatggccggtgtcaacatcaatgaa
gagaacgcacgcatccttgcaacaaactccgagttggttggcactgtaatccggtcctgt
aaagatgaaacatttctctcttctgtgtctcttcagaaaaaagctttagaaatagggaag
aagcatggcgtgaccgaggtgaactctgacgtgttgaacaccatatctcacgcgacgcaa
gagcatttacgggaactggtggaaaagctcactgtgattgcacagcatcggatggcgaca
tacaaggacgatgaccgatacagcctcttgaacgataccaggtcacagctgaagtttttc
gagcagttggatcggctggagaagcagaggaaagatgaagacgaaagggaaacgctgcta
aggttagcaaagagtcgggccaagaacgaagatccagaacaacttaggttaaagcaaaga
gccaaagagatgcaacaattggaacttgcacagttgcagcaacgggaggcgaatcttgca
gcgctggctgccatcggaccaagaaaaagaaaaacacccgattcaccaggtctccgaaca
ggaaacgagggctcaagtggcagcgggggtgcaccaggcggcctgagaacaatgcaggcc
cgaccctacctgcggcagagggtaacgcgagtcaatctcagggatctcatcctctgcttg
gagcaggaacaggcaacaaagcactctctgctcctgtaccgagcctatctcaaatga
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