Scyliorhinus canicula (smaller spotted catshark): 119973016
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Entry
119973016 CDS
T11175
Name
(RefSeq) clathrin heavy chain 1-like isoform X1
KO
K04646
clathrin heavy chain
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Pathway
scau04142
Lysosome
scau04144
Endocytosis
scau05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
119973016
04142 Lysosome
119973016
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
119973016
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
scau04131
]
119973016
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
scau04147
]
119973016
Membrane trafficking [BR:
scau04131
]
Endocytosis
Clathrin-mediated endocytosis
Clathrin
119973016
Exosome [BR:
scau04147
]
Exosomal proteins
Proteins found in most exosomes
119973016
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Clathrin
Clathrin_propel
Clathrin_H_link
Clathrin-link
TPR_COPA_B
TPR_Vps41
Gp18_dom_I
capSnatchArena
TPR_Vps8
Motif
Other DBs
NCBI-GeneID:
119973016
NCBI-ProteinID:
XP_038666438
LinkDB
All DBs
Position
1:12697568..12766229
Genome browser
AA seq
1679 aa
AA seq
DB search
MAQILPIRFQEHLQLQSQGVNPANIGFSTLTMESDKFICIREKVGEQAQVVVIDLNDPTN
PIRRPISADSVIMNPASKVIALKDAGKTLQIFNIEMKSKVKAHIMVEEVTFWKWISLNTV
ALVTETAVFHWSMEGDSQPQKMFDRHASLAGCQIINYRTDLQQKWLLLIGISAQQNRVVG
AMQLYSVDRKVSQPIEGHAAAFADFKLEENPTPSTLFCFAVRSQAGGKLHIIEVGQPAAG
NQPFTKRAVDVFFPPEAQTDFPVAMQIGTKYGVIYLITKYGYIHLYDLESGVCIYMNRIS
AETIFVTAPHEPTSGIIGVNKKGQVLSVCVEEENIVNYATNVLQNPDLALRMAVRSNLAG
AEELFARKFNTLFAQGNYSEAAKVAASAPKGILRTPDTIRKFQTVPAQPGQASPLLQYFG
ILLDQGQLNKYESLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKTADPTLALSVY
LRANVPNKVIQCFAETGQFQKIVLYAKKVGYTPDWVFLLRNVMRVSPDQGLQFAQMLVQD
EEPLANINQIVDIFMENNLIQQCTSFLLDALKNNRPSEGHLQTRLLEMNLIHAPQVADAI
LGNQMFTHYDRAHIAQLCEKAGLLQRALEHYTDLYDIKRAVVHTHLLNPEWLVNFFGALS
VEDSLECLRAMLSANIRQNLQLCVQVASKYHEQLGTQSLVELFESFKSYEGLFYFLGSIV
NFSQEPDVHFKYIQAACKTGQIKEVERICRESNCYDSERVKNFLKEAKLTDQLPLIIVCD
RFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRLPVVVGGLLDVDCSEEVIKNLITIVRGQ
FSTDELVGEVEKRNRLKLLLPWLEARIHEGCEEPATHNALAKIYIDSNNNPERFLRENPF
YDSSVVGKYCEKRDPHLACVAYERGQCDLDLIKVCNENSLFKSEARYLVRRKDPELWANV
LEEENNPFRRQLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNNVF
SEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNQLFEEAFAIFRKFDVN
TSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLARAQLQKDLVKEAIDSYIKADDPSAYM
EVVKAANKNDNWEDLVKFLQMARKKAKESYVETELIFALAKTNRLSELEEFVNGPNNAHI
QQVGDRCYDDGMYDAAKLLYNNVSNFARLASTLVHLGEYQAAVDSARKANSTRTWKEVCF
ACVDGEEFRLAQICGLHIVIHADELEELISYYQDRGYFEELISLLEAALGLERAHMGMFT
ELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAVITM
MSHPTDAWKEGQYKDIIAKVANVELYYKALQFYLDFKPLLINDLLLVLSPRLDHTRAVSF
FSKVDQLPLIKPYLRSVQNHNNKSVNEALNNLLTEEEDYQGLRTSIDAYDNFDNIILAQR
LEKHELIEFRRIAAYLYKGNNRWKQSVELCKKDCLYKDAMQYTAESKDTELSEKLLEWFL
EEGKQECFASCLFTCYDLLRPDVVLELSWRHNIMDFAMPYFIQVMREYLSKVDELMEKVD
KLDASDSLRKDEDQVTEPAPLVFGQQLMLTAGSTAVPPQPGYAYGYPAGYAQPAYGFNM
NT seq
5040 nt
NT seq
+upstream
nt +downstream
nt
atggctcagatcctccccatccgcttccaggagcatctgcagctccaaagccaaggggta
aatcctgccaacattgggtttagtacccttaccatggaatcagacaagttcatctgcatc
agggagaaggtgggagaacaggcgcaagtggtggtgatcgacctgaatgatccaacaaat
ccaattcggcgcccaatatctgctgacagtgttatcatgaacccagcaagcaaagtgatt
gctctgaaagatgctggaaaaaccctacagatatttaacattgaaatgaagagcaaagtg
aaagcacatattatggttgaagaagtaacattctggaaatggatctctttgaacactgtt
gccctagtaactgagactgcagtattccattggagcatggaaggtgactctcaaccgcaa
aagatgtttgacagacacgcaagcttggcaggatgtcaaatcattaactacaggacagac
cttcagcagaagtggttgcttctaattggaatttctgcacagcaaaacagagtagttggt
gcaatgcagctgtactctgtagacagaaaggtatctcagccgattgaggggcatgctgca
gcctttgctgacttcaaattggaagagaatcctacaccatcaaccctcttttgctttgcc
gtccgcagtcaggctggagggaagttacatattatagaagtaggtcaaccagctgcgggg
aaccagcctttcacgaagagagcagtggatgtgttttttcctcccgaggcccaaactgat
tttccagtagcaatgcagattggaacaaaatatggagttatatatcttatcactaaatat
ggctatatccacttgtatgatttggagtctggtgtttgcatctacatgaaccgtattagt
gcggagaccatttttgtgactgctccccacgaacctacatctggtattattggagtcaat
aaaaaaggacaggtattatctgtctgcgtggaagaagaaaatattgttaactatgccacg
aatgtgctccaaaacccagacttggctctgcgtatggctgtaagaagcaaccttgctggt
gctgaggaactctttgcacgaaagtttaatactttgtttgcacaaggaaactattctgaa
gctgcaaaagtagctgcatctgcaccaaagggtattctgcggactccagacaccattaga
aaattccagactgtcccagcccagccagggcaagcttcgcccctcttacaatattttggg
atcctcctcgatcagggacagctgaataagtatgaatcattggaactctgccgacctgtc
ctgcaacaaggccgcaagcagctgctggaaaaatggctaaaagaagataagctggagtgt
tctgaagagctgggggacttggtgaagacggctgatcccacactagctttaagtgtctat
ctccgtgccaatgtgccaaataaagttatacaatgttttgcggagactgggcaattccag
aaaattgttctctatgcaaaaaaggttggttacactcctgactgggtctttctgctgaga
aatgtcatgcgggtgagccctgaccaggggcttcagtttgcacagatgcttgtccaggat
gaggagcctctagctaatatcaatcagattgtggatatatttatggagaataacctgatc
cagcagtgtacatctttcctattggatgctttgaagaacaatagaccttctgagggccac
ttacaaacccgtttgcttgaaatgaatttgattcacgctccacaggttgctgatgcaatc
cttggaaaccagatgttcactcactatgaccgagcccatattgcccagctgtgtgaaaag
gctggcttgctgcagagggctttggagcattatacagatctgtatgatattaaacgtgct
gtcgtacacactcaccttttgaaccctgagtggcttgtgaactttttcggtgcactctct
gtggaagattctcttgagtgcttgcgtgccatgttgtcggccaatatccgccagaatctt
cagctttgtgtgcaagtagcatccaagtaccacgagcaacttggcactcagtcgctggtg
gaactctttgaatcatttaagagttacgaagggttattttatttccttggatccattgtg
aatttcagtcaagagccagatgttcacttcaagtatattcaggcagcatgtaagactggg
cagattaaggaagttgaacgtatatgtcgtgagagcaactgctatgattcggaacgtgtg
aaaaacttcctaaaggaagctaagttgacagaccagctcccactgattattgtgtgtgac
cggtttgactttgttcatgacctagttctgtacctgtaccgcaacaacctgcagaagtat
attgaaatctatgttcagaaggtgaatcccagcaggcttccggtagtggtgggtggactg
ctggatgtggattgctctgaagaagttattaaaaatcttatcactatagtccgtggacag
ttctcaactgatgagcttgtgggtgaagtggagaaaaggaacagattgaaattgctactt
ccgtggctggaggctagaattcatgaaggttgtgaagaacctgctactcacaatgctttg
gccaagatctatattgatagcaataacaacccggagcgtttcctgcgcgaaaacccattc
tatgatagttctgtggttggcaagtactgtgagaagagggatccacatttggcttgtgtt
gcttatgaaaggggccagtgtgatctggatctcatcaaggtttgcaatgaaaactctctg
ttcaagagtgaggctcgctatcttgtacgtagaaaagatccagagctttgggccaatgtc
cttgaagaagaaaataatccttttagacgacagctgattgatcaggttgtccaaacggcc
ctgtctgaaacccaggatccagaggaagtatctgttactgtgaaggcctttatgactgca
gaccttcccaatgagttgattgaactgcttgagaaaatagtcttggataacaacgtcttt
agtgaacatagaaatctacagaacctactgattctcactgctattaaagccgatcgcacc
cgtgttatggagtacattaatcgtctggacaactatgacgctcctgatattgccaacatt
gctatcagcaatcagctttttgaagaagcctttgcaatctttcggaagtttgatgtgaac
acctctgcagtgcaggtcctaattgagcacattggaaatctggatcgggcttatgagttt
gcagaacgttgcaatgagccagctgtatggagtcagctggccagagcacagttgcaaaag
gatttggttaaagaagccatagattcctatataaaggctgatgatccatctgcttatatg
gaggttgtgaaagcagccaacaaaaatgataactgggaagacctagtgaagtttctgcaa
atggcccggaagaaagcgaaggagtcctatgtggagactgagctgatatttgctctggca
aagactaaccgtctgtctgaattggaggagtttgtcaatggacccaataatgcccacatt
cagcaagttggtgatcgctgctatgatgatggcatgtatgatgcagcaaagttactttac
aacaacgtgtccaactttgctcgcttggcttccactctggtacatctaggagagtaccaa
gctgctgtggacagtgcccgcaaagctaacagcaccaggacttggaaagaggtttgtttt
gcctgtgttgatggtgaagagttccgtctggcccagatatgcggactacacattgtcatc
catgcggatgaactggaggagttgatcagttattaccaggatcgagggtattttgaggaa
ctaatctccctcttggaagctgcattgggtttggaacgggctcatatgggaatgttcaca
gagttggcaatcctgtattctaaatttaagcctcaaaagatgcgtgaacacttggaactc
ttctggtccagagttaatatcccaaaggtccttcgtgctgcagagcaggcccatctttgg
gctgagctggtcttcctgtatgataaatatgaagagtatgacaatgcagtaattactatg
atgagtcacccaaccgatgcttggaaagaagggcagtacaaagacatcatcgcaaaggtt
gccaatgtagaattgtattacaaggctctgcagttttatttggatttcaaaccgctattg
atcaacgatttattgctagtgttgtcaccacgtttagaccataccagggcagtcagtttt
ttcagtaaggtggaccagttgccgctaattaaaccatacttgcgctctgtccagaatcac
aataacaaatctgtgaatgaagctctgaacaaccttcttactgaagaggaggattatcag
ggtttgcgtacctctattgatgcatacgataattttgacaatattatccttgctcagcga
ttagaaaagcatgaactaattgagtttaggcgcattgctgcttatctctacaaaggtaac
aatcgctggaaacaaagtgtggaactttgcaaaaaagactgcttgtacaaggatgcaatg
caatatacagcagaatccaaggacactgagctctctgagaagctcttggaatggttcttg
gaagagggcaagcaggaatgttttgcatcctgcttatttacgtgctatgatttattgcgg
cctgatgtagttctggagctgtcgtggaggcataacatcatggactttgcaatgccgtac
tttattcaagttatgagggaatatcttagcaaagttgatgaattaatggaaaaggtagat
aaacttgatgcttcagatagcttaaggaaagatgaagaccaagtgactgaaccagctcca
ctagtatttggtcagcagttgatgttgacggcaggctccactgcagttcccccgcagcct
ggttatgcttatggttatccggctggctatgctcagcccgcttatggcttcaacatgtag
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integrated database retrieval system
