Scyliorhinus canicula (smaller spotted catshark): 119973096
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Entry
119973096 CDS
T11175
Symbol
tmf1
Name
(RefSeq) TATA element modulatory factor isoform X1
KO
K20286
TATA element modulatory factor
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
scau04131
]
119973096 (tmf1)
Membrane trafficking [BR:
scau04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
119973096 (tmf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TMF_TATA_bd
TMF_DNA_bd
DivIC
Motif
Other DBs
NCBI-GeneID:
119973096
NCBI-ProteinID:
XP_038666547
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All DBs
Position
11:complement(57094373..57155816)
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AA seq
1135 aa
AA seq
DB search
MSWFNASHLSSFAKQALSQAQKSIDRVLDIQEDEGADSITPGYEEEILPGRSSSISEGWV
STEWSAPSEDGLKPHSASSPTAITTPVTRTVVDESATFFNAFLNSTDTQTIEQTLVVSKP
PTKSQMPKEVEDTLTVHLTESVELIVPEKENAAEKCTMGPQTDLTEFNTADQLNDSQLQA
AEAEYSESFASKELQAKDDVTLIGTENVTVSETSKVTQPNTLPAFSSERVHKNSVKTEQL
LSPPNSPSKSQTPPGKDLVLEAKEQKSEDRQSNTPSPPISTFSSGTSTTSDIEVLDHESV
ISESSASSRQEAVDSKMMQTSFQLLSTSACADYHRLDEYQKLTESSGSSDAFERIDTFSV
QSLDSQSVSEINSDDEMSGRGCNVTAMPLTPPLCNTLPADQLVKNVEESTNDSQKENALD
ECEMEESGRSATPVNSEQPEILPVLGLTVIENHNSESIVINGLSEGTVKVECLPSGEFKK
YQLQEIIDELTDKLEKREAQLLSVSKDKAALEEAIDNLKDEMIRLKEESNSIPSIKDEFT
QRIAESEKKVHLACKERDNIKKELNTVKAELSTRFTTNETADLVREKDEQIRGLLDEGEK
LSKQLLNNSNIIKKLRAKEKENEALVTKQSKKTKEQEEEIKHLQQVLDGKEEVEKQHREN
IKKLNSVVERQEKEMSKLQMTLEELQENNRSHQSALDSSYKELAELHKANAAKDSEAQEA
ALSHEIKTKEALSVALEQAQEEARQQQEALAGQVAGLRLGLQRAEQQQARKEDYLRQEIG
ELQQRLQEGDNRNQELSQSVTSASRPLLRQIENLQAALVAQSTSWEKLEKNLSNRLADGQ
AQLAAAVEKERSVSEELLTLKTQVSSLDSQNSLLRKEKSRLQVQLESERVRLEKTEDESN
RHHVEFDNLKTEYIKALEEAKKEKIALTNQLEMEKLKVEQERKKAILAQDALKEKERKLF
TNQVLEPVSSTPTLSRSSSVSGAEMASLQASINSQDDSFEHSFSTMTTSTSGNNLYEALR
MGAGSSFFENLQSQLKQREGEIVQLQLEIANLEKTRTIMAEELVKLTTQNDELLEKLNEI
PKLRVQLKDIDQRYNTILQMYGEKAEEAEELRLDLEDVKNMYKTQIDELLKQRLT
NT seq
3408 nt
NT seq
+upstream
nt +downstream
nt
atgagctggtttaatgcctcacatctatcgagcttcgctaaacaggcgctgtctcaggct
cagaaatccatcgacagagtcttagacatccaggaagatgagggggctgacagtataacg
ccgggatatgaggaagaaattctgccaggaagaagctcttccattagtgaaggatgggtt
tccacagaatggagcgcgccttcagaggatggtttgaaacctcattctgcatcttcaccc
acagctattacgacaccggttacacgaacggtggtagacgaatcagcgaccttcttcaat
gcctttttgaactctacagacactcaaactattgaacagactctagttgtttctaaacct
ccaaccaaatctcagatgcccaaagaagtggaagacacattaactgttcatcttacagaa
tctgttgaattaattgtgccagaaaaggaaaatgcggcagagaaatgtacaatgggaccc
caaacagacctcacagaatttaacacagcagatcaacttaatgatagccagttgcaagct
gcagaagctgaatattcagaatcttttgcaagtaaggagttgcaggcgaaggatgacgtg
acattaattgggacagaaaatgtgacagtctctgagacttctaaagtaacacagccgaat
acattgcctgcttttagttctgaaagggtgcataaaaattcagtaaaaacagaacagtta
ttgagtccacccaacagcccttcaaaatcccagactcctccggggaaggatttggttctc
gaggcaaaagagcaaaaatcagaggacagacaaagcaatactccttctccaccaattagt
acattttcatcaggaacatcaaccaccagtgacattgaggtattggaccatgagagtgtc
attagtgagagctcagctagttcaagacaggaggctgtagattcaaagatgatgcagact
tcctttcagttgctatcaacgtcggcatgtgctgactatcatcgcctggatgagtaccag
aaacttaccgaaagtagtggctcttcagatgctttcgagagaattgacacttttagtgtg
cagtcattagacagccaaagtgtgagtgaaattaattcggatgatgaaatgtcaggtcgg
ggatgtaatgtgacagccatgcctctaactccgcctctctgtaatactttgccagctgac
cagctggtgaagaatgttgaagagagcacaaacgacagtcaaaaagaaaatgcacttgat
gagtgtgaaatggaggagagtggacgaagtgcaacaccagtgaatagtgaacaacctgag
atcttgcctgtacttggtctgacagtaattgagaaccacaattcagaaagtatagtaatt
aatggactgtcagaaggaactgttaaagttgaatgtctacccagtggtgaatttaaaaaa
tatcaattacaagagataattgatgagttgacagacaagttggaaaagagagaagcacag
ttgttgtctgttagcaaagataaggcagcattggaggaggcaattgataacctaaaagat
gagatgattagactgaaggaagaaagcaacagcatcccatcaataaaagatgagttcacc
caacgtattgcagagtctgaaaagaaagtccatcttgcttgcaaggaaagggataatatt
aaaaaggaattaaataccgtgaaggcagaactgtcgactagatttaccactaatgaaaca
gcagatttagtccgagagaaagatgagcagattagaggactgctagatgaaggagagaag
ctttctaaacaactcctgaacaattcaaacattataaagaaattaagggctaaagagaag
gaaaatgaggccctggtcaccaaacagagcaagaaaaccaaagagcaagaggaagaaatt
aaacatctgcagcaggtgcttgatggtaaagaagaagtggagaaacagcatcgggaaaac
atcaagaagctgaatagtgtggttgagagacaggaaaaagagatgagcaagctgcaaatg
accttggaagagctacaggaaaacaatcgcagccatcaatctgcacttgacagctcctac
aaagagcttgctgaactgcataaggctaatgcagctaaggatagtgaagcccaagaggca
gctttgagtcatgagattaaaacaaaggaagcattgtcagtggcactggaacaagcccag
gaagaggcaaggcagcaacaggaggctcttgctggtcaagtggcgggccttagattaggt
cttcagcgggctgaacagcaacaagccaggaaggaggactacttgcgccaagaaattggt
gaattacagcagagacttcaggaaggagataatcgcaaccaggagctcagccaaagtgtt
acatctgcaagcagaccattgctacgacagattgaaaacctgcaggcggcgcttgtggca
caatcaacatcctgggaaaaactggaaaagaacctatctaatcggctagctgatggtcaa
gcccaacttgctgctgctgtggaaaaggaacggtcggtttcagaagagcttctcactctt
aaaacccaagtctcctcattggattcacaaaacagcttgttgcgtaaggagaagagcagg
ctgcaagttcaattagagtctgagagagtcaggcttgagaagacagaagatgaaagcaac
aggcatcatgtggagttcgacaatctgaagactgaatacattaaggcccttgaagaagca
aagaaagaaaagattgccttgactaatcagttagaaatggagaagttgaaagttgagcag
gaaaggaaaaaagcaattcttgcacaagatgcattaaaagagaaggagcggaagttgttt
actaatcaggtgctggagccggtgtcaagtactccaacactctcccgatctagttctgtc
agcggtgctgagatggcatccttgcaggcctccatcaactcacaggatgattcatttgaa
cattcattttcaacgatgacgacgtcaactagtggtaacaacttgtatgaagccctgaga
atgggagcaggatcaagcttctttgaaaatttgcagtctcagctgaagcaaagagaagga
gaaattgtacagttgcagcttgaaattgctaatcttgaaaagactcgaactatcatggct
gaagaactcgtcaagttaactacacagaatgatgaattactcgaaaagctgaatgaaatt
cccaagttgcgtgtacagcttaaggatattgatcagcgatataacaccatcctccagatg
tatggtgaaaaagcagaggaagctgaggaactgcgactggatttggaagatgtgaaaaac
atgtacaaaacccaaatagatgaattattaaaacagcggctaacctga
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