Scyliorhinus canicula (smaller spotted catshark): 119973347
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Entry
119973347 CDS
T11175
Name
(RefSeq) LOW QUALITY PROTEIN: laminin subunit beta-4-like
KO
K06245
laminin, beta 4
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Pathway
scau04510
Focal adhesion
scau04512
ECM-receptor interaction
scau04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
119973347
04518 Integrin signaling
119973347
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
119973347
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Ortholog
Paralog
GFIT
Motif
Pfam:
EGF_laminin
Laminin_N
LAMININ_IV_B
EGF_LMN_ATRN
LAMB1
LAMB4
Laminin_I
CCDC39
CCDC18_1st
Tropomyosin
AAA_RNF213_1
NET2A
TerS_C
DUF948
CEP89
Motif
Other DBs
NCBI-GeneID:
119973347
NCBI-ProteinID:
XP_038667210
LinkDB
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Position
11:123473801..123637650
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AA seq
1818 aa
AA seq
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MFTRGRKSQKKLAPFLILQKEMRLQVVTLLALVNVAHTQEDCNAGSCYPPLGDLLVGRNS
QLSASSTCGLNGPETYCILGHLQDEQKCFICDSRLPYNHISSTNSHLIENVITAFEPERK
RKWWQSKNGVHHVSIQLDLETLFQFSHLILSFKTFRPAAMLVERSSDYGRTWRVMRYFAH
YCEHSFPNIPTGPAQRVDDVICDSKYSDLEPSTGGEVVLKALDPHFQIHDPYSHEIRELI
TFTNLRISFTQLHTLGDTRLRRRQARVDEKYYYALYEMVVRGSCFCYGHASQCIPIDNIR
GDVFSHQGMVQGQCVCQHNTDGVNCERCKDFYNDSPWQPAIGIERDDCRRCNCNGHSERC
HFDMAVYLASGEISGGVCEECQHNTMGQNCDQCKPFFYQDPRRIISDLLACVPCNCDPEG
SLNNGMCESHSDPALRTLAGRCICKRNVEGTRCDQCKSGFXGLSSINADGCEDCRCDSRG
SMSAQSACNPVTGECHCQRYTSGRNCEQCLPNYWGLGTGIYGCSPCDCDIGGAYDNHCSL
LDGQCRCLPNIINRQCNEPAPGYFFAPLDYYLYEAELAEPVGNSGSLVRPSSLPPCNEYL
QKHGYRVEHGKLILHRIAKRHMRRQRKRQTVSPESQVQVVSREHVPGRPMTWTGLGFARV
PHGMGLRFVIDNIPYPMDFTAAIRYESESTDDWMASVRVRPTNQPSASHCRNNLPSQEAY
TVAMPAATRIAILNTHICLEPQVQYIVETYFNPVPTPNSQPSSHILIDSLGLIPRIDSLE
DFNRNGDLDEYRRYRCIDVAYQVGPQTLPEVCERLIASMSARIHNGAVPCCCNPQGSISP
VCSKFGGQCQCKPGVIGQCCESCAPGFYRFGANGCSACHCDRQGSVDSVCDQLTGQCRCH
RNIDDRACDHCQHGHYGFPNCRPCQCNGYSEHCDPQTGACQNCRAFTTGNNCERCSEGYF
GNPHLNEPCRPCQCPDIPNSGRYFAHSCHADPRTVQVVCNCLDGHTGMHCERCSPGFYGI
LTGIGGGCLPCNCNNNIDGRDPESCDQQTGVCLKCLYNSNGPNCQFCKPGYYGSAVNKDC
RQCACNGNGVDTAHCLSEDICLCDQETGQCPCLPYVVGSSCDKCAPGFWNWLSGEGCEPC
LCDPQNSASNQCDELTGHCQCKDSYGGKTCSECQDKYYGDPKVHCKPCNCTFEGTGSPAC
DKLTGACNCREGVTGQRCDKCAWGYCKEFPKCTPCHPCFKLLDEEICALSPAIDMSNRTT
FVPGVKLGPSFDKRFKKLEKKIAVVANILNDSVISPDALQQTMDYFEKIRKIKMEINPNV
NISNGTKELNRDIDDLDKEVDKLIQDMNTFSNKSGIKAYMNGTFEDIETYYQNSSASQQK
VNDSEVLLNNSETTREEAAALLDKIMLIDQNKVFALNNKTKLLDISILNNKLCGAQGNLS
CDEDRCGGALCRDRFGNKVCGAPNCTGALSEANAAKNLTDDTRDQMNDLLGKLQNTISRI
DSLRNMAEETKEKAIKLSHEVNKTKDAIEKEKQESKATINKVKEFLTANSVSSEDLENIA
NYVLSIKIPITPEEVKNKSKQIQDILSEIKDLDKALEKLNSRSEEAKMLLKRAIKAENAT
QRIPSPKQLKKDLDDIKDIQKNVEDTVQKITDNLNDVQTKISQADRKIKSSFDKLMDLMN
SVTKLQNQVEDLENKISNNKNVSKMVKKQASEAKTHAEEAEQDFQKMNEAYTKLSKINVQ
EIPDDGKQKAEQLQQEAADLAKDLEDKLKRVTDLEKKIQDGNKKIMETTDYLSSLEQNVT
AIRKEFEDKVSFYTDCQS
NT seq
5454 nt
NT seq
+upstream
nt +downstream
nt
atgtttacaagaggacggaaaagtcaaaaaaaactcgcaccgtttctgatcctacaaaaa
gagatgaggctgcaggttgtcacattgcttgcattggtaaatgttgcccacacacaagaa
gactgcaatgctggttcttgttacccacctcttggagacctgcttgtggggcgcaacagt
cagctatctgcttcctcaacttgtggtctgaatgggcccgaaacatattgcatcctaggt
cacctacaggatgaacaaaagtgttttatttgtgattcaagattaccgtacaaccatatc
agctccaccaacagccatctaatcgaaaatgtcatcacagcttttgagcctgagcggaaa
aggaaatggtggcagtcaaaaaacggtgtgcaccatgtcagcattcaactggatttggaa
acactttttcaattcagtcaccttattctttccttcaagacattccgcccagctgcaatg
ttggtagagagatcatcagattacggtcgaacatggagagtgatgcgatattttgcacat
tattgtgaacactccttcccaaatattcccactggacctgcacagagagtggacgatgta
atatgtgattcaaaatactctgaccttgaaccgtctacaggtggagaggttgttctgaaa
gcactggatccacatttccaaatccatgatccatacagccatgagatacgagagcttata
acatttactaatctgcggataagtttcactcaacttcacaccttgggagacacgcgattg
cggagaaggcaggctagagttgatgagaagtattattacgcactgtatgaaatggttgtt
cgagggagctgcttttgctatgggcatgccagccagtgcatacctattgataatataaga
ggtgacgtattcagccatcaaggaatggttcaagggcaatgcgtctgtcagcacaatacg
gatggtgtaaactgtgaaaggtgtaaggacttttacaatgattcgccatggcaaccagcg
atcggaatagagagagatgattgtagaagatgtaactgcaacggacactccgagagatgc
cattttgacatggcagtgtatttggccagcggagagatcagcggtggggtttgtgaggaa
tgtcaacacaacacaatgggtcaaaactgtgaccagtgcaagcccttcttctaccaggat
ccgaggagaatcatttctgacctacttgcatgtgtcccctgtaactgtgatcctgaaggc
tcactaaacaatggaatgtgtgaaagtcactccgacccagccctccgtacacttgctggc
cgctgcatctgtaagagaaatgttgaagggacaagatgtgatcagtgcaagtctggcttt
ggactaagctctattaatgctgacggatgtgaagattgccgatgtgattcacgcggcagc
atgtcagcacaatcggcttgtaacccagtcactggggaatgccactgtcaacgatatacc
tctgggagaaactgtgaacagtgtctgccaaattactggggccttggaactggtatctat
gggtgttctccctgtgattgtgacatcggaggggcctatgataatcattgctccttgctt
gatgggcagtgtcggtgtctccccaacattatcaatcgccagtgtaatgaaccggctccg
gggtacttctttgctccattggattactatttgtatgaagctgaacttgcagagcccgta
ggaaatagtggttctttggtaaggccatcatctctgccaccgtgtaatgagtatttacaa
aagcacggctatagagtggagcacggcaaactgatacttcacaggattgctaaacgtcat
atgcgacgtcagaggaagaggcaaactgtgagtccagaatcccaggtacaggttgtttcc
agagaacatgttcctggtaggcccatgacttggacgggtctgggttttgctcgtgttccg
cacggaatgggactgcgattcgttattgacaacattccatacccgatggatttcacagct
gccattcgctatgagtcagagtcgacggacgattggatggccagtgttcgcgttcggcca
acaaatcagccaagtgctagccactgccgaaataacttgccctcacaggaagcttataca
gttgccatgccagccgctaccaggattgcaattcttaacacccatatctgcctggaacct
caagtacagtatatcgtggaaacatacttcaatccagttccgactccaaacagtcagccc
agcagtcacatcttgattgattctctgggtctgattccaaggattgactccctggaagat
ttcaataggaatggagatttggatgagtacagacggtatcgatgcatcgacgttgcctat
caagttggacctcagactttaccagaagtgtgtgagagactaatagccagcatgtctgct
cggatccacaatggggctgtcccctgttgctgtaatcctcaagggtcaatcagtcccgtc
tgcagcaagtttggtggtcagtgccagtgtaagcctggcgtgattgggcaatgctgtgaa
agctgcgcacctggattttatagatttggtgccaacggctgttcagcttgtcactgtgac
cgtcagggatccgttgattcagtctgcgaccagctgactggacaatgccgttgccacaga
aatattgacgaccgagcctgtgaccactgtcagcatggacattacggattccctaactgt
cgaccatgtcagtgtaatggttattctgagcactgtgaccctcaaacaggagcctgtcag
aactgtcgagcatttaccactggaaacaactgtgaacgctgtagtgaaggttactttgga
aatccacatttaaatgaaccttgtcgaccatgtcagtgtcctgacattccaaacagtgga
cgctattttgctcattcttgtcatgcagatccgcgaacagtacaagtagtttgcaactgc
cttgatggccatacaggaatgcactgtgagagatgttcccctggattctatggaattctg
acagggattggaggcggctgtttgccttgcaactgtaacaataacatagacgggagagat
ccagagtcatgtgaccagcagacgggcgtgtgtttgaaatgcctgtataatagcaatgga
ccgaactgccagttctgcaagccaggatattacggatctgctgtgaacaaggactgtaga
caatgtgcttgcaatggcaatggagttgacacggcgcattgtctttccgaagatatatgt
ttgtgtgatcaagaaactggccaatgcccgtgcttaccatacgtggtcgggagcagctgt
gacaaatgtgctccgggtttctggaactggctcagtggagaaggatgtgagccttgttta
tgtgaccctcagaattccgccagcaaccagtgcgacgagcttactggacactgtcagtgt
aaggatagctatggtggaaaaacatgttccgaatgccaggataaatattatggcgaccca
aaggtgcactgtaaaccctgtaactgcacatttgaaggaacgggaagtcctgcgtgtgac
aagctgacaggcgcctgtaactgtcgtgaaggcgtaacggggcagcgttgcgacaagtgt
gcctggggctactgcaaggagtttccaaaatgcacaccgtgtcatccttgtttcaagctg
ctggatgaagagatctgcgccctgagcccagcaatcgacatgtccaacaggaccaccttt
gtgccgggagtaaaattgggtccttcctttgacaaacggtttaaaaagctagaaaagaaa
attgctgtggtggccaacattctgaatgactctgttatttcccctgacgcacttcagcag
acaatggattattttgaaaagatcagaaaaatcaaaatggagattaatccaaatgtgaat
atttcaaatggcaccaaggagcttaatagagacattgatgatcttgataaggaagttgac
aagctcattcaggacatgaatacattcagtaacaaatctggaataaaagcttacatgaat
ggtacttttgaagacattgaaacgtactatcagaattcatcagcctcacagcaaaaggtg
aatgattcagaagtgctgctgaacaactcagaaacaacaagagaagaggcagctgctttg
ttagacaaaataatgttgatcgatcaaaataaggtttttgcactaaacaacaagacaaaa
ctattggatataagcattctaaataataagctttgtggagcacaagggaatttatcctgt
gatgaagatcgatgtggaggagctctatgtcgtgacaggtttggaaataaagtatgtggt
gccccaaactgtaccggagctctgtcagaggcaaacgctgcaaaaaacctaactgatgat
acaagagaccagatgaacgatctcttaggaaaattgcagaacacaataagcaggattgac
tccctcagaaacatggcagaggaaaccaaggaaaaggcaatcaaattgtcccatgaggta
aacaagaccaaggatgcaattgaaaaggaaaagcaagaaagcaaagccacaatcaataaa
gtgaaagagtttctcacagccaacagtgtttcttctgaagaccttgaaaacattgcgaac
tatgttctttccatcaaaatacctattactcctgaggaagtgaaaaacaaaagcaaacaa
attcaggacattctttccgaaattaaagacctggataaagcacttgaaaaactgaacagt
cgctccgaagaagcaaagatgcttttgaaacgtgcaattaaagcagagaacgcgactcaa
aggatccccagcccaaagcaactaaagaaagacctggacgatattaaagacatccaaaag
aatgtcgaagacacagtgcagaagatcactgataacctaaatgatgtgcagactaagatt
tcacaggctgacaggaaaatcaagtcaagttttgacaaactgatggatttaatgaacagt
gttacaaagttacaaaatcaagttgaagacttggaaaacaagatcagtaacaacaagaat
gtatctaaaatggtaaagaagcaagcgagtgaagcaaagactcacgctgaggaagctgaa
caagactttcaaaaaatgaacgaagcttacacaaagttaagcaaaatcaatgtgcaagaa
attccagatgatggaaaacaaaaagcagaacaattacaacaagaggctgctgacctggca
aaagacctggaagataaactaaaacgagttacagacctggagaagaagatacaagacggg
aataagaaaataatggagacgacagattatttgtctagtctcgaacaaaatgtgaccgct
attagaaaggaatttgaggacaaggtcagcttctacactgactgtcaatcatag
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