Scyliorhinus canicula (smaller spotted catshark): 119973349
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Entry
119973349 CDS
T11175
Symbol
lamb1a
Name
(RefSeq) laminin subunit beta-1a
KO
K05636
laminin, beta 1
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Pathway
scau04510
Focal adhesion
scau04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
119973349 (lamb1a)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
119973349 (lamb1a)
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SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
LAMININ_IV_B
Laminin_N
EGF_LMN_ATRN
LAMB1
F5_F8_type_C
ATG17_like
CHASE3
Motif
Other DBs
NCBI-GeneID:
119973349
NCBI-ProteinID:
XP_038667211
LinkDB
All DBs
Position
11:123675649..123798637
Genome browser
AA seq
1782 aa
AA seq
DB search
MFHFRIITVFVTFWRCVITQGPEFSYGCAEGSCYPATGDLLIGRADRLTATSTCGRYKPE
PFCIVSHLQEVKKCFSCDSRALFAENSNSHRIENVVTTFAHNRLNTWWQSENGLENVSLQ
LDLEAEFHFTHLIMTFKTFRPAAMMIERSSDFGETWQVYRYYAYDCESSFPGISVGSLKK
VDDIICDSRYSDIEPSTEGEVIYRVLDPAFKIDDPYSRRIQNMLKITNLRIKFTKLHTLG
DNLLDSRVEIKEKYYYAIYDMVVRGNCFCYGHASECAPVHNSDDHDVDGKVHGRCVCRHN
TKGLNCELCEDFHQDAPWKPAEGRNSNACQRCSCNGHADKCHFDLAAYIASGNVSGGVCD
GCQNNTMGQHCEQCKPFYYQHPERSIRASDICEACNCDPAGSFNGGVCDSHTDLTANLIA
GQCRCKLNIEGERCDFCKEGFFGLSVDDPMGCQPCTCNHLGTHPGGTPCDDVTGNCFCKR
LVMGKNCDQCLPQHWGLSNDLDGCRPCDCDLGGSYNNNCSAETGQCPCKEHMVGRRCNEV
ESGFYFIALDHYTYEAEEADLGPEVTIIQRQYPQDRSPTWTGIGFVRVPEGAYLEFHIHD
IPHSMEYDILIRYEPQLPKNWEEAKITVLRPGKIHTNSRCGNTTPGDDNQMFSLQSGSRY
VVLPQPVCFEKGLNYTIRLELTKYSSGDEMETPYMFIDSLLLMPHCRSLDIFSVGESSEI
VTNRLWETFQRYRCLENSQSVTKIPMTEVCRGILSSISSIIHEGALPCGCDPQGSLSSVC
NPSGGQCQCRSSVVGRNCDRCAPATYGFGPSGCRPCDCHKEGSVSEFCHHVTGQCRCNEG
VYGRQCDQCQPGYWGFPNCRPCQCNGHADHCDLESGECLGCRDHTSGHNCGSCLSGYYGD
PVLGSGDHCRPCPCPDGPGSGRQFATDCYQDPNSRNIICLCQPGYTGARCDECASGFYGN
PNETRGHCQECHCSNNIDMADAESCDKQTGECLKCLYHTEGVSCNLCQLGYYGNALQQNC
KKCVCNYLGTIQTQCSSADECHCNQTTGQCPCLPNVVGLACDHCAPNTWKLASGAGCELC
NCNEVHSRTASCNQFTGQCQCMAGFGGRTCIDCQEFFWGDPDVECMKCDCNEYGIETHQC
NQTNGHCICREGVAGDRCDKCARGYSGTFPRCEPCHACFKLWDKEIEELTNRSKQLLAQA
DSVKDSGIVGPYQETVNAVQEKINDIRTLLAENPATEPLDSIGDLLEEAKKKVIDLTDKV
NVIESDLGATADRNNVTDAELNVLQSDAESLKAVVNELAEQLEYIKNSDVHGALDSVQKY
FNQSLEAEVKVNSSTTDPDNILLESLSIREKVDDMISQSQDNFEQQQKEHSQSLEELADK
LQNLDLSPLSKKICGSPAGVSCAEAQCGGPNCQDDDGTRKCGGIGCDGLVTLAHKAWQDS
MDFDTAVLNALAEVDQLSKMVADAKIKADEAKLNAQKVLLKTNTTKEKVDKSNEDLRNLI
KQIREFLTQDGADLESIEAVANEVLKLEMPTTPQQLQDLTNDIRARVESLSDVEVILNQS
AADIERAEALLDEARKSRIHATEVKDAADRVKEALDEAEKAQNAAAKAIKQANEDIEGTQ
DLLTSIESETVASEQSLNNATERLAQIEKDIDELKQKTADNTNTAETIGDTADKVKQAAD
EAKQVLDTILKEKYTIVEDTIVKKSDAASDARKKAKLLQIEAESLLSDASRKLELLKKLE
RSYDANQKALEEKAQKLIKLEEDVRSLLQTISQKVAIYSTCL
NT seq
5349 nt
NT seq
+upstream
nt +downstream
nt
atgttccacttcaggattataactgtttttgtcacattttggcgctgtgttatcacccag
gggccagagttcagctacggctgcgctgaggggagttgttacccagccacaggagaccta
ttgattgggcgagcagatagactcactgccacttccacctgtggcaggtataagcctgaa
cccttctgcattgtcagccaccttcaggaagtaaaaaaatgcttttcatgtgattcacgg
gctctttttgctgaaaattcgaacagccatagaattgagaatgttgtcaccacgtttgct
cacaaccgactaaacacctggtggcagtctgaaaatggcttggaaaatgtttcccttcaa
ctggacctggaagctgaattccattttacccacctcattatgaccttcaagacttttcgt
ccagctgctatgatgatagagcgatcttctgatttcggagaaacctggcaggtctatcga
tattacgcttatgattgcgagtcatcctttccaggcatttcagtaggatcattgaagaaa
gtggatgacattatctgtgactctcggtactctgacattgagccttctactgaaggagag
gttatctaccgtgtgttggatccagcctttaaaattgatgatccttatagccgaagaata
caaaatatgctgaagatcacaaacttgaggataaagtttaccaagctccatactctgggt
gacaatttgctggactcgagagtggaaatcaaagaaaaatattactacgctatctatgac
atggtagttcggggcaactgtttttgctacggacatgccagtgagtgtgctcctgttcat
aattctgatgaccatgatgtggatgggaaggtacatggtcggtgtgtatgtcgacacaac
accaaaggtttaaactgtgagctatgtgaggatttccaccaagatgcaccttggaaacct
gctgaaggccgcaacagcaatgcatgccaaagatgtagctgcaacgggcatgctgataaa
tgtcactttgacttggctgcatatatagcatctggtaatgttagtggtggtgtttgtgat
ggctgtcaaaataatacaatgggacagcactgtgaacaatgcaaacctttctactaccag
catccagaacgaagtattcgtgccagtgacatctgtgaagcttgtaactgtgaccctgcg
ggatcatttaatggtggagtctgtgacagtcacactgatttgacggctaatctcattgcg
gggcagtgccgttgtaaactaaacattgagggtgagcgctgtgatttctgcaaagagggt
ttctttggactaagcgtggatgatcctatgggatgccagccgtgtacctgtaaccatttg
ggaacacatccaggaggaacgccatgtgatgatgtaacagggaattgcttctgtaaacgt
ctggtgatgggaaagaactgtgatcagtgtctgcctcaacactggggattaagcaatgac
ctagatggctgtcgcccttgtgactgtgacctgggggggtcgtacaacaataattgctcc
gcagagacaggtcagtgcccttgtaaggagcacatggtcggacgtcgctgcaatgaggtt
gaatctgggttttattttattgccctggaccactacacatacgaggcagaggaagctgac
ttaggtccagaagtgacgataatacagcgacaatatccacaagatcgctctccaacctgg
accggaattggatttgtaagggttcctgaaggagcatatctggaattccacatacatgac
attccacattctatggagtatgacatactgattcgctatgaaccacagctgccaaagaat
tgggaagaagcaaaaataacagtgttgcgccctggtaagattcataccaacagtcgatgt
ggaaacacaacacctggtgatgacaaccaaatgttctctctgcagtcaggatcaaggtat
gtggtcctacctcaacctgtatgctttgaaaaaggactaaattacacaatccgtttagaa
ttaacaaagtattcttctggcgatgaaatggaaactccttatatgttcatagattcgctt
ctactcatgccccactgcaggtcattggatatattctctgtaggggaatcgagtgagatt
gtcacaaacagactctgggaaaccttccaacggtaccgttgtttggagaacagtcaaagt
gttactaagattccaatgactgaagtttgtcggggcatcctgtctagtatttcttccata
atccatgaaggagctttgccttgcgggtgtgaccctcaaggatctctcagttctgtttgt
aatcccagtggtggacaatgccaatgccgctccagtgtagtcggtcgaaattgtgaccga
tgtgctcctgcaacgtacggttttggtccgagcggctgtaggccatgcgactgtcacaaa
gagggttctgtaagtgaattttgccatcacgttactggccagtgtcgatgtaacgaagga
gtatatggccggcagtgtgaccagtgtcagcctggatattggggatttcctaattgccgc
ccctgccagtgtaatgggcatgcagatcactgcgacttggaaagtggggaatgtttgggc
tgcagagatcatactagtggacataattgtggcagctgtctgtcaggttattacggagac
ccggtacttggatcaggtgaccattgtcgcccatgtccttgcccagatggtccaggcagt
ggacggcagtttgcaaccgactgttaccaggatccgaattcccgaaatatcatatgcctc
tgtcagcctgggtacacaggtgcacggtgtgatgaatgtgcatctgggttttacggtaac
cccaatgaaacaagagggcactgtcaggagtgccattgcagcaacaacattgatatggct
gacgcagaatcatgtgacaagcaaacaggagagtgtctaaaatgtctatatcatactgag
ggtgtaagctgcaacctctgccagcttggctattatggcaatgcactgcaacagaattgc
aaaaagtgtgtctgcaattacctgggtaccatacagactcagtgctcttctgcagatgaa
tgtcattgcaaccaaacaactggccagtgcccttgtcttcccaatgtggttggtcttgca
tgtgatcactgtgcgcctaatacctggaaactagcaagtggagcaggctgtgagctctgc
aattgtaatgaagtccactcacgtacagcatcttgtaatcagttcacaggacagtgtcag
tgcatggctggatttggagggcgaacttgcattgactgtcaagagttcttctggggagat
cctgatgtggaatgtatgaaatgtgactgtaatgaatacggcattgagacacaccagtgt
aaccaaacgaatggccactgcatctgtcgggaaggggttgctggtgaccgttgtgataag
tgtgcccgaggctactctggtacatttcctcgttgtgagccgtgccatgcgtgcttcaaa
ctctgggataaagaaattgaagagctgactaaccgaagcaaacaacttttagcacaggct
gattcagtcaaggacagtggaattgtgggtccttaccaagaaactgttaatgctgtgcag
gaaaaaatcaatgacatacgaactctacttgctgaaaatcctgctactgaaccacttgac
agcatcggggaccttttggaagaagccaagaagaaagtcattgaccttacggataaagtt
aatgtgattgaatccgatcttggagctacagcagaccgaaataatgtaactgacgcagaa
ctaaatgtccttcagagtgatgctgagagtttaaaagctgttgtgaatgagctagcagaa
cagttggagtacattaagaactccgatgtccatggagccttggacagcgtccagaaatac
tttaaccagtctctcgaggctgaagtaaaggttaattcttccaccactgatcccgataat
atattgctggaatccttgagcattcgagaaaaagtggatgatatgatttcacagagtcag
gataactttgaacagcagcaaaaagaacattcacaaagtctggaagaactggctgacaaa
ttgcaaaatctagacctttcaccattaagcaaaaagatttgcggtagccctgcgggggtg
tcgtgtgcggaagcacaatgtggaggtccaaactgtcaagatgatgacggaactagaaaa
tgtggaggaattggctgtgatggacttgtaactttagcccataaagcatggcaggattcc
atggattttgacactgcagttctaaatgctttggcggaggtggatcagctttctaaaatg
gtcgctgatgcaaaaattaaagcagatgaggctaaactaaatgcacaaaaggtactccta
aaaaccaatacaacaaaagaaaaagttgacaagagcaatgaagacctaaggaatcttatc
aagcaaatcagggaatttctcacacaggatggtgctgacctggagagtatcgaggcagtt
gccaacgaagtcttgaagttagaaatgccaaccactcctcagcaacttcaggatctgacc
aatgacattcgtgcccgggtagaaagtctgtcagatgtagaagtaatcttaaaccagagt
gcagcagacattgagcgggctgaagcactgctggatgaggccaggaaatccagaattcat
gcaacagaagttaaagatgcagctgatcgtgtgaaggaggccttggatgaagctgaaaag
gcacaaaatgcagcagcaaaggccatcaaacaagctaatgaagacattgagggaacgcaa
gacctgctgacctcaattgaatcagagacggtagcatcagagcaaagcctcaacaatgct
actgaacgcttagcacagattgaaaaggatattgatgaattaaaacagaagacggcagac
aacacaaacacagctgaaaccattggggacactgcagataaagtaaagcaggctgcagat
gaggccaaacaggtactcgatactatcctgaaagaaaagtacacgattgtggaagacacc
attgtaaaaaaatctgatgcagcttctgatgctcgaaagaaagcaaagttattgcagatt
gaagctgaatcgttgttatcagatgcaagtcggaaacttgagttattaaagaaactggaa
agaagttacgatgccaaccagaaagctctggaggaaaaagcacaaaagttaataaagctg
gaagaagatgtacgttcattactgcagacaattagccagaaagttgctatctatagcact
tgtttataa
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