Scyliorhinus canicula (smaller spotted catshark): 119973542
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Entry
119973542 CDS
T11175
Symbol
fbxo18
Name
(RefSeq) F-box DNA helicase 1 isoform X1
KO
K10300
F-box DNA helicase 1 [EC:
5.6.2.4
]
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
scau04121
]
119973542 (fbxo18)
Enzymes [BR:
scau01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
119973542 (fbxo18)
Ubiquitin system [BR:
scau04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
119973542 (fbxo18)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD_C
F-box-like
F-box
UvrD_C_2
Viral_helicase1
AAA_30
Motif
Other DBs
NCBI-GeneID:
119973542
NCBI-ProteinID:
XP_038667759
LinkDB
All DBs
Position
11:complement(157208879..157267905)
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AA seq
1006 aa
AA seq
DB search
MTHYGRGKRRHLNPSDCWSLSNSSEGAFSLAQPFTYTVTNGDLNRGLYPRNRKDRRTAAQ
LYPLQRQWVHNGRRLSKDVTSGKDIVGSSSSKVDCVFDPEDFLSLFAESNVLALNSKSKE
EHSVLLLRSPNEARDAAWGRCTRSPSLEDAPTGQQQNWVEGEEPEVDALPDSYFGLLGCT
HSQTLPSGHISQLPDEILRIVFLSLPAEDLYRLSSVCPQWWRVISDPMFVPYKKLYYRYR
KGEERAVKEIDQILKENNIKKENELCVLNLIKFVASFQNVLSVTSEAVLRCLKDHPLFKQ
SEASVAETLPDLANAAGITHVWAILAVIVLLSESVKDVQGLISCLQQTRSTLPLTEVMEI
LYCMATLLFALREKDINISNRIHYNLFCALYLLGNPASIGRRHVKHLCSARSSGRLEVHK
LELTREQQQILKQETAPGRVIQIMGFAGAGKTSTLIEYAWSRPRLTFLYIVCAKPVPMVI
NHIFPPNVECTTMHAMAYRSIGYKYQRMRRLMFSDLKPFAIFGLPEARGSFLRASLICQS
LCTFFSSTDGTISVSHVPEHSKRARGGIRPTEYQENLELVEDAKRIWRRMRDLGEPKENG
YFMTEDGEVDERYLKLWQLSKPSLSQFDVILLDEAEDCSPAIMDIVLSQKCGKILAADPH
QQISGFDGTVGALRPHLFSLTQSFRFGPQIAYVAATILDVCKNVKDKTLVGRSQDGNADD
KTGQVAILCRTDAAVFDEAVRVVTSDHPGKIYIIGGLDKLGMDTILDVWMLLMLEKEPAT
AEDLVFRDPFIRIFERKGGLRSLKDYAAEAEDKELEDRIAVVEKYSVGLPVLLEKIASYS
VTDSAFASIILGTVHKAKGYEFDMVQINNDLAKVPGYRHDHHTLLDFRIDAVPDIDWNLL
YIAVTRAKRCLVMSRSLECLLSFAGEYFLKWELTSSLLVEGTLPSCRARGCLNRIASETV
LTLRTVPNTRSGGEDAGGPLCFACAKQRIGPMAYLTAPPELVRLAR
NT seq
3021 nt
NT seq
+upstream
nt +downstream
nt
atgactcattatggacgaggcaaacggagacatcttaatccatcagactgttggtccttg
agcaatagtagtgagggtgctttctcactggcccaaccattcacctatacagtcaccaac
ggagatttgaacagaggcctctacccaaggaacaggaaagatagaaggacggccgcccag
ttgtaccctctccaaagacagtgggtgcacaatggccggaggctgtcaaaggatgtaacc
agtggcaaagacattgttggttcatcatcctccaaggtggattgcgtttttgaccctgaa
gattttctttccttgtttgctgaaagcaatgtgctggctctgaattcaaagtccaaggaa
gagcactcggtcctgttgttgagaagcccaaacgaggcccgtgacgcagcctggggccgt
tgtacaaggagtcccagcttagaagatgcccctacgggccagcagcagaattgggtcgaa
ggggaagaaccggaggttgatgctctcccggactcgtactttggattactgggatgcaca
cattcccagaccttgccttctggtcacatcagtcagctgcctgatgaaatcctcaggatt
gtgttcctttctctgccagcagaagacctctatcgcctcagctcagtgtgtccgcaatgg
tggcgtgttattagtgacccaatgtttgtaccatataagaagttgtactatcgatacagg
aagggagaagaaagagctgtgaaggagattgatcagatcctgaaggaaaataatattaaa
aaggaaaatgaactttgcgtgctgaatctcataaagtttgtagcatctttccagaatgtt
ctgtccgtgacctctgaagccgtcttgcgttgcctaaaagaccaccctctgttcaagcaa
tctgaagcatctgtggctgagactctgcctgatttggccaatgcagctgggattacacat
gtgtgggcaatactggctgtgatcgttctcctgtccgaaagtgtgaaggatgtccaggga
ctgatttcctgtctccagcaaacccggtcgaccctgcccctaacagaggtgatggagatc
ctgtactgcatggcgaccttactgtttgccttgagagagaaggacatcaatatcagcaac
agaattcactacaatctgttctgcgcactctatttgctggggaatccagccagtatcggt
agacgacatgtgaagcacctttgctcagctcggagctctggcaggctcgaggtacacaaa
cttgaactgactcgagagcagcaacaaatactgaagcaggaaactgccccaggacgtgtg
attcaaataatgggatttgcaggtgcaggtaaaacgtctacactgatcgagtatgcgtgg
agcagacctcgcctcacgttcctgtacattgtttgtgctaagcctgttccaatggtgatt
aatcacatcttcccaccaaatgtggagtgtacgactatgcacgcaatggcctatcggtct
ataggttacaaataccagcgtatgaggaggttaatgttttctgacctgaaaccattcgct
atttttggacttcccgaagcacgtggcagctttctcagagcaagcttgatctgccaaagc
ctctgcacattcttctcctccacggatgggactatctcggtttctcacgtaccagaacac
agtaagagggcccgcggagggatcaggcccacggaatatcaagaaaacctggaactggtt
gaagacgcaaagaggatttggcggaggatgagggatcttggtgaacctaaggagaacggt
tacttcatgactgaagatggtgaagttgatgaaagatacctgaaactttggcaacttagc
aaacccagtctgtcacagtttgatgtcatccttttagacgaagctgaagattgtagccca
gcaatcatggacattgtactctcccagaagtgtgggaagattcttgcggcagatccacac
cagcagatcagtggattcgatggtactgtgggcgctctgcgtccccatctgtttagcctg
acacagagtttccgatttggacctcagattgcctacgttgcggcaacaatattggatgtg
tgcaaaaatgtaaaagacaagaccttggttggtagaagccaagatggcaatgctgatgat
aagactgggcaggtggctattctctgcaggactgatgcagctgtgtttgacgaggccgtg
cgcgtcgtgacgagtgaccatccaggcaaaatatacatcatcggagggcttgataaatta
ggtatggacacaatactggacgtctggatgcttctgatgctggagaaggaaccagcaaca
gcggaagaccttgtattccgggatccattcatcagaatatttgaacgtaaaggtggtttg
cgaagtttgaaagattatgcagctgaagctgaagataaggagttggaagacaggattgca
gtggtggagaaatatagtgtgggactccctgtactcctagagaaaatcgccagctactct
gtcactgattcagcatttgcaagtattattttgggaactgtgcacaaagcaaaaggatac
gagtttgacatggtgcagataaacaatgaccttgcaaaagtgccaggctatcgacatgat
catcatacacttttggatttcaggatagatgcagtgccagatattgattggaacttgctt
tacattgctgtgacgcgggcaaaaaggtgtctcgtgatgagcaggtctttggaatgtctg
ctgtcctttgctggtgaatattttctgaaatgggagctgacttccagcctgcttgtagag
ggaacactccctagctgccgggcaagaggatgtttgaatcgcattgcgagtgaaacagta
ttaactctgagaacagtgccaaatacacggagtggtggcgaagacgctggaggtccactt
tgcttcgcgtgcgcaaagcagcggattggcccaatggcctacctcactgcacccccagag
ctggtgaggttggcgaggtag
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