Scyliorhinus canicula (smaller spotted catshark): 119974275
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Entry
119974275 CDS
T11175
Name
(RefSeq) poly(A)-specific ribonuclease PNLDC1-like
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Pathway
scau03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119974275
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scau03019
]
119974275
Enzymes [BR:
scau01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
119974275
Messenger RNA biogenesis [BR:
scau03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
119974275
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Phage_P2_GpE
Motif
Other DBs
NCBI-GeneID:
119974275
NCBI-ProteinID:
XP_038668975
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Position
12:69870295..69918659
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AA seq
531 aa
AA seq
DB search
MFGESGRGRATELAIPGVYPFRAGSDVKKARRKEHVESQRLKQKEGELGSGVNMCEVTAA
NFQLLYPQIKEEIAKCDFVAIDTELTGLHTNSSPAGQLSLFDSPEERYGKLRPSVTRFTV
SQIGLSLFTQESNSTNGFFALCYNFYLFPPSFGPLDAEFTFQSSSCSFLAKYGFDFKKFF
REGIPYLNVEQESRLQVLLAAGTWSLSNSALKDMLKMTITEVSEWLVRAQEGDSLMLSGL
PGLQVFEIQLMLRRGISNIWTEIEDQDKVVIQKVSYSKRTQLENSVTDVCRVDRVLEAAL
GFTLVFRELVGANKPLIGHNMLLDLMYIHDKFYRSLPESFADFKTNIHKLFPSVFDTKHI
SKRMRQEFQSLQIPNLFALHSVLESRLVDLAQHGPSLHHISGCEKYAENDCPHEAAFDAF
ICGAVLLQLAQLLLINQGSVFEPRIPLIGEYLAAVEPHKNNVNLIRARVSFMSLSGDDPQ
AERPPILLVKVRRGWSSSPAEIAREFATFCSLDVRKESPRHYLLATNEWKG
NT seq
1596 nt
NT seq
+upstream
nt +downstream
nt
atgtttggggaaagtgggcggggccgggcgaccgagttggctattccgggcgtgtatcca
ttcagggcgggcagtgacgtcaaaaaggcgcggcggaaggagcacgtggagagccagagg
ctgaaacagaaagagggagaattgggaagtggggtgaatatgtgcgaggtgacagcagca
aatttccaactgttatatcctcaaatcaaggaggagatcgcaaagtgtgactttgtagca
atcgacactgaactgactggtttgcataccaacagctcccccgctggacagctgagtttg
tttgactccccagaggaacgctatgggaaactgaggcccagtgtgacgaggtttaccgtg
tcccagattggcctctctttgtttacccaggagtctaattcaaccaatggattttttgct
ctctgctacaacttctacctcttcccaccgagcttcgggcctctggatgctgaattcacc
ttccagtcctccagttgctccttccttgcaaaatatggttttgatttcaagaagtttttc
agggagggaatcccatacctaaacgtggaacaggaatcgagactccaagtccttcttgca
gccggaacttggtccttgagcaactctgccttgaaggacatgttgaagatgacgattact
gaggtctcagagtggcttgttcgagctcaggaaggagattcgctcatgctgtccggccta
cccggtctccaggttttcgagatccagttgatgttgaggcgagggatatccaacatctgg
actgagattgaagatcaggacaaggttgtgattcagaaggtcagttattccaaacgaaca
cagttggagaactcggtgacagatgtttgccgtgtggatcgggtgctggaggcagcgtta
ggatttaccctcgttttccgtgagctggtcggagccaacaagcctctgattggacacaac
atgttgttggacttgatgtacattcacgacaagttttacagatcactgccagagagtttt
gctgattttaagaccaacatccacaaactcttcccctctgtctttgataccaaacacatc
agcaaacggatgagacaggaatttcagtccctccaaattccaaatctctttgctcttcat
tctgttctcgaaagcagactggtcgacctggcacaacacggaccctcactgcatcacatc
tctggctgtgaaaaatatgctgaaaatgactgtcctcatgaagcagcatttgatgcgttt
atctgtggtgcagtgttgctgcaactggctcaactgctcctgatcaatcagggaagtgtc
tttgagccccggattccactgattggggaatatctggccgcagtggagccacacaagaac
aatgtcaatctgatcagggcccgggtttctttcatgtctctgtcaggagatgatccacag
gctgaaagacctcccattctgttggtgaaggtgcgtcgcggctggagttcgagccctgcg
gagatcgctagggagtttgcgacattctgctccctcgatgtccgaaaggagagtccaagg
cactacctgcttgccacaaacgagtggaaggggtga
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