Scyliorhinus canicula (smaller spotted catshark): 119974423
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Entry
119974423 CDS
T11175
Symbol
efl1
Name
(RefSeq) elongation factor-like GTPase 1
KO
K14536
ribosome assembly protein 1 [EC:3.6.5.-]
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Pathway
scau03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
119974423 (efl1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
scau03009
]
119974423 (efl1)
Ribosome biogenesis [BR:
scau03009
]
Eukaryotic type
Pre-60S particles
GTPases
119974423 (efl1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFL1
EFG_C
EFG_III
GTP_EFTU_D2
EF-G_D2
MMR_HSR1
SSXT
EFG_IV
Motif
Other DBs
NCBI-GeneID:
119974423
NCBI-ProteinID:
XP_038669214
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Position
12:44493442..44898529
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AA seq
1137 aa
AA seq
DB search
MGHTSLENIVDLQKNTANIRNICIVAHVDHGKTTLADSLIASNGIISNRLAGKLRYMDSR
EDEQLRGITMKSSSISLHFSVDNQEYLINMIDSPGHVDFSSEVSTAVRVCDGAVVVVDVV
EGVCPQTQAVLRQAWLENIRPILVINKIDRLIIELKLTPLEAYIHLQKILEQVNAVTGSL
FTSKVLEDRAEMEVTEKPCSGSKSSEHIYDWSAGLEETDDSHLYFAPEQGNVVFGSAIDG
WGFRIEQFVQMYSQKMGISAEVLLKTLWGDYYLNTKAKKIMKGAQSKGKKPLFVQLVLEN
MWSLYEAVVVRRDKEKIDKIVNSLGLTILPRDSRHTDPKVHLNAICTQWLPISQAVLSMV
CNKLPSPLDIAAERVERLMCVRSRRFDSLPAQTQALKQAFLECKSDETAPVIVFICKMFA
VDAKLLPQNKLRPLSQEEISQRREQARKRHAEKLANQMQKLEQCPPEKTLEISSANASTR
DIQISEQMDLSRQDDQHKECFIAFARVYSGTIRKGQKLFVLGPKYDPSEALAKLSESCSP
GDDLSIPHLAHCTVENLFLLMGKELESVQEVPVGNVLGIGGLEDYVLKSATLSTSPVCPP
FTPLNFEATPIVRVAVEPKHPSEMPQLVRGMKLLNQADPCVEVLVQETGEHVLVTVGEVH
LQRCLDDLRERFAKVEISSSEPIVPFRETIIRPPKVDMVNEDIGTQQKIAVIHQKKEDHN
KYPDGVLVDSDGLVTLNTPNKLSTLSVRAMPLPEAVTQLLEENSDLIRTIEQFNLSVKEG
REALEITLTTLEAVQKFKQKLEENFVGRKWRNAVNQISSFGPRRCGPNILLNRLESYHRP
SMWQCLDRTGLDLSTYKDFDNSIVSGFQLATLAGPVCEEPLMGVCFILEKWDMNKVQQFV
QTHNQSSTEEQTTKTQDLQQQVTSNENTLSELEPIFESPAGQRGQVQGNLTPAESMADGN
CNSELVLTDCYGPFSGQLIATMKETCRYAFQARPQRLMAAMYTCEIMATAEVLGRVYAVL
SKRAGRVLQEEMKEGTEMFIIKAILPVAESFGFADEIRKRTSGLASPQLVFSHWEVIPSD
PYWVPTTEEEYLHFGEKADSVNQAHKYMNTVRRRKGLYVEEKIVEHAEKQRTLSKNK
NT seq
3414 nt
NT seq
+upstream
nt +downstream
nt
atgggtcatactagtttggaaaacattgttgatctacaaaagaatactgccaacatccgg
aatatctgtatcgtagctcacgtggaccatggaaaaaccaccttagctgacagccttatt
gctagcaatgggatcatttctaatcgacttgcaggaaagttgcggtacatggacagccgg
gaggatgagcagctccgaggaattacaatgaaatccagttccatatcattgcacttcagt
gtggataatcaagaatacctcatcaatatgatagattctcctgggcacgtggatttttcc
tctgaagtttcaactgctgtacgtgtgtgtgacggtgctgttgtagtggtcgatgttgtt
gaaggagtttgtcctcagacacaggcagtgttacgccaagcctggttggaaaacattcgt
ccaatcttggtcattaacaaaatagatcgactaataattgagctaaagttgactccactt
gaagcctatattcacttgcagaagattctggagcaggtaaatgctgtgactgggagcctg
tttacatcaaaagtattggaagatagagcagagatggaagtcacagaaaagccgtgttca
ggctccaagagcagtgaacacatctatgactggagtgctggcctggaagaaacagatgat
tcacatctttactttgcccccgaacagggaaatgtggtttttggaagtgctattgatggc
tggggcttcagaattgaacagtttgtccagatgtacagccagaaaatgggtattagtgct
gaagtgttgctgaagactctctggggtgactactatctaaacacaaaggcaaagaagata
atgaaaggagcacagtcaaaagggaagaaacctctctttgtccagttggtgctggaaaac
atgtggagtctgtacgaggctgtagttgtcagaagggacaaagagaagattgataagata
gtaaattcattgggtttaaccattctacctcgtgattcacgccacacggatcctaaagta
caccttaatgccatttgtactcagtggcttcccatctctcaagctgtgttgtcaatggta
tgtaacaagctgcccagtcctttggacattgctgcggagcgagttgaaaggctcatgtgt
gttcgaagcagaagatttgattcactacctgcccaaacccaagccctcaaacaagcattc
cttgaatgcaagagtgatgagactgccccagtcatcgtgtttatttgcaagatgtttgct
gttgatgccaagcttttgccccagaacaagttgagacccttgagtcaagaagagatatct
cagcgacgggagcaagccaggaaaagacatgcagaaaaacttgcaaatcagatgcagaag
ttggaacaatgcccacctgagaagacccttgagatctcctcggctaacgcaagtacaaga
gacattcagatatcggagcagatggatctcagcagacaggacgatcaacacaaagaatgc
ttcattgcatttgccagagtgtacagtggaacaatccgcaaagggcagaaattgtttgtg
cttggaccaaagtacgatccttcagaagctttagccaagttgtcggaaagctgttcacct
ggtgatgacctgtcgatcccacacctggctcattgcacagtggagaacttgttcctgcta
atgggaaaagaattagagagtgtacaagaggtacctgttggcaatgtactaggtattgga
ggcttagaagactacgtcctaaaatctgctacgttgtcgacttcccctgtatgtccacct
tttacacctttgaacttcgaggcaacgcctatagtacgggtggccgtggagcccaaacat
ccaagtgaaatgccacagctggtgagaggaatgaagctgcttaatcaggctgatccatgt
gtggaagtgctcgtccaggagacaggagagcacgtattagtaactgttggagaggtccac
ctgcagcgttgcttggatgacctccgtgaaaggtttgcaaaggttgaaatcagttcatca
gaaccaattgttccattcagggaaacaatcattcgaccaccaaaggtggacatggtaaat
gaagatataggcacacagcaaaagattgctgtcattcaccaaaagaaggaggaccataat
aaatatcctgacggtgtacttgtggattcagatggacttgtgaccttgaatacacccaat
aagttgtccactctcagtgtgagagccatgccacttcctgaagcagtgacacagctactt
gaagaaaacagtgatctgatccgtacaatagaacagttcaatctatctgtaaaagagggc
cgggaagctctagagatcactctgacaactcttgaggctgtccaaaagtttaagcaaaag
ttggaggagaattttgtaggccggaaatggagaaatgcagtgaaccaaatttcatcattt
ggaccacgccgttgtggtccgaatattttactaaatagattagaaagttatcatcggcca
tccatgtggcagtgtcttgacagaaccggattggacttgagcacatacaaagactttgac
aacagtatagttagtggatttcagttggccacccttgcaggtcctgtgtgtgaagaacct
cttatgggtgtttgcttcattttagaaaaatgggacatgaataaagtacagcaatttgtt
caaacacacaatcagtcttccactgaggaacaaacaacaaagactcaggatttacagcag
caggtaacctcaaatgaaaataccctttccgaattggagcctatattcgaaagcccagca
ggacaacgtggccaggttcagggcaatctgactccagctgagagcatggcagatggcaac
tgtaactctgagttggtacttacagattgctatggtcctttctcaggccagctcattgcc
acgatgaaggaaacttgtcgttatgcgttccaggcacggcctcagcggctaatggcagca
atgtacacatgtgagattatggcaactgcggaagtattaggtcgggtctacgcagtcctt
tcgaagcgtgcaggccgagtgttacaggaagagatgaaggaagggacagaaatgttcatc
ataaaggccattttgccagtcgcagagagctttggctttgctgatgaaatcaggaaacgg
acaagtggtctagctagcccgcagctggtgttcagtcattgggaggtaattcccagtgat
ccctactgggtacccacaacagaagaagagtacttgcattttggagagaaggctgattca
gtaaaccaggcacacaagtacatgaatactgtgcgcagacggaaagggctgtatgtggaa
gagaagattgtcgagcatgctgaaaagcagagaacactcagcaaaaataaataa
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