KEGG   Scyliorhinus canicula (smaller spotted catshark): 119974521
Entry
119974521         CDS       T11175                                 
Symbol
xrcc1
Name
(RefSeq) DNA repair protein XRCC1 isoform X1
  KO
K10803  DNA-repair protein XRCC1
Organism
scau  Scyliorhinus canicula (smaller spotted catshark)
Pathway
scau03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:scau00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    119974521 (xrcc1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:scau03400]
    119974521 (xrcc1)
DNA repair and recombination proteins [BR:scau03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Short Patch-BER factors
     119974521 (xrcc1)
SSDB
Motif
Pfam: XRCC1_N BRCT BRCT_2 PTCB-BRCT LIG3_BRCT
Other DBs
NCBI-GeneID: 119974521
NCBI-ProteinID: XP_038669390
LinkDB
Position
12:62421827..62462986
AA seq 684 aa
MPEIKLKHVVSCSSEDLTHKADNLLKPDTYRKWKCCDLGEKQSSLILQFEKAEYIHHIDI
GNEASAFVEVLVGNSTSACEQDFEVILVSSFFMSPTESRSGTNLNRVRMFGPDKLAKATL
SKKWDRVKVVCTQPYNKSLAYGLSFIRLYSTPEDIETSPGSSSPQKITKLGQFVVKEEDG
SGNSLKPGSLFFSRASRPQLSPPTAVAAPSQSDKPTASYAAAALQASGVASPSSSFAPKE
KSAAKPGSGTSSPKPLTLGKRKFDFAKERMEGLPVKKESPGEGSESSSKKTSPLPSATKK
FKGEPSPKAVSLPSPQPGSSRKGPGGSPPLLKKKVKKGRRGSEETVEFHSILEGTVFVLS
GFQNPFRSELRDKALEMGAKYKSDWSSDSTHLICAFANTPKYTQVKSQGGCVVRKDWILD
CHKRKQRLSYKRYLLDGPESSGECSEGEEEDLTDRLSSRPEAVLDRKVSPEQPRKAPAKE
PRLTPKQEEPWRAGREEVGVGTSRTGPRPLTPDEDYGGSTDEDSPVGGKSIDDDSGCDTE
DELKRVQEQHQKKHKAQKKEESDPYAGSTDENTDVEESAGGDVDLPIPELPDLFLGKHFL
LYGEFPNGEHRILTRYITAFNGALEEYMNDAVNYVVTAEEWDDRFDEALMENSNLAFVKP
RWVYVCNEKQRMVPHQPYVVVPQL
NT seq 2055 nt   +upstreamnt  +downstreamnt
atgcccgagatcaaactcaaacatgtcgtctcctgcagcagtgaggatttgacacacaag
gctgacaacctgctcaagccggacacctacaggaagtggaagtgttgtgacctgggggag
aagcagtcatctctaatcctccagtttgagaaggcggaatatattcaccatatcgatatt
ggtaatgaagcctctgccttcgtggaagtgttagtggggaactccacttccgcctgtgag
caggattttgaggttatccttgtgtcctcattcttcatgtctccaacggaaagtcggagt
ggcacgaacctcaacagagtccgcatgttcggccccgacaaacttgccaaagccactttg
agcaaaaagtgggaccgtgtcaaagtggtctgcacccagccctacaacaagagtttggca
tacggcctctcgttcatcaggctttactccactcctgaagacatcgaaacatctcctggg
tcctcctcaccgcagaagatcaccaaactgggtcagtttgttgtgaaggaggaggacggg
agcgggaacagtctgaagccaggcagcttgtttttcagtcgggcgagcagaccccaactc
agcccacccacagccgtcgctgctccatcgcagagcgacaagccgacagcaagctacgcg
gcagcagcactgcaggcgagtggtgtcgcgtctccgagttcttcgtttgcgccgaaggag
aaatctgcagcaaagcccggttcgggcacatcctctccaaagccgctgactctggggaaa
aggaagttcgactttgctaaggagaggatggaaggacttcctgtcaaaaaggagagcccc
ggagagggatctgaatcttcgagcaagaagacgagccctctgccgtctgcaaccaaaaaa
ttcaaaggtgagccgtctccgaaagctgtttccctcccatccccgcagcctggttcctcc
aggaaaggtccaggagggagtccccccttgcttaagaagaaggtgaagaaaggacgaaga
gggtcagaggagaccgtcgagttccacagcatcttggagggcacagtcttcgtcctgagt
ggatttcagaatcccttccgctcagagctgcgggacaaggctctggaaatgggggccaag
tacaaaagcgactggtcatctgacagcacccacctcatatgcgcctttgccaacacaccg
aagtacacccaggtcaagtcccagggtggttgtgttgtccggaaggattggatcttggac
tgccacaagaggaagcaacggctctcctacaagcggtatcttttagatggtccggagtcc
agtggtgaatgttcagagggagaggaggaggatttgactgaccgtctgtcatctcgacct
gaagctgttttggatagaaaggtctctccggaacaacctcgcaaagcacccgccaaggag
cccagattgacccccaagcaggaggaaccttggagagcaggacgagaggaggtgggagtt
ggcacatcgcggactggtcccaggccgctgactccggatgaggactacggaggttcaaca
gatgaggattcgccagttggtgggaagagtattgacgatgactctggctgtgacacagag
gatgaactcaagagggtacaggagcaacatcagaagaagcacaaggcacagaagaaggaa
gagagcgatccgtatgccggctcaacagacgaaaatacagatgtggaggagagtgctggt
ggagacgtggacctacccatccccgagctccctgacctcttcttgggcaagcacttcctc
ttgtatggagagttccccaacggcgagcatcggattttaacccgctacatcaccgccttc
aatggagccctggaggaatacatgaatgacgcagtaaactacgtggtcactgctgaagaa
tgggatgatcggtttgatgaggctctgatggagaattcaaatctggccttcgtgaagcct
cggtgggtttacgtctgcaatgagaaacagagaatggtccctcaccagccctacgttgtg
gtaccccagctatag

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