Scyliorhinus canicula (smaller spotted catshark): 119974646
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Entry
119974646 CDS
T11175
Symbol
msh6
Name
(RefSeq) DNA mismatch repair protein Msh6
KO
K08737
DNA mismatch repair protein MSH6
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Pathway
scau03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
119974646 (msh6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
scau03400
]
119974646 (msh6)
DNA repair and recombination proteins [BR:
scau03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
119974646 (msh6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
MUM1-like_PWWP
Motif
Other DBs
NCBI-GeneID:
119974646
NCBI-ProteinID:
XP_038669646
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All DBs
Position
1:276489338..276511104
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AA seq
1377 aa
AA seq
DB search
MPRFHFPASAKAGPAGGSMSRQRTLFTKSPPLSASKAKAGTEADVPPAKKEKASPRENES
GARPPKRPQSAARSPFSSAGEGKVGKAGRSPALSPTCDFTPGDVVWAKLEGYPWWPSLVY
NHPTADEYLRGKGKSLRMHVQFFDDPPTRGWVNVKYIKMYNGSECKEAQRGGVYFSGKPE
IRRAMELADNAIPKSRERRLELAVCCEPSEPEEEEEMEVGDQSTVSEEDKENNSEDEKVK
KGASRATRSASTKAKRRRIVVESDSDIESSEDEFKPDQEGSSDECSSGIDEQDLSEPDTE
TDPDSPVKTPFKRKRGVTVGPAKAKSASSSPSETPKRPTAAMSSSTKSRLSAFSAPETFE
SQSNGGASGSASPVATWDHEKLEWLKPGTRKDAKRRKEGDPDYDCATLYVPDDFLYKCTP
GMRRWWDLKTQMLDTVIFYKVGKFYELYHMDAVTAVNELGLSFMRGCWAHSGFPEIAFGR
FSDVLVQKGYKVARVEQTETPEMMEARCKSLPHPTKYDRVVRREVCRIITKGTQTYSVLN
GSSLESCNKYLLCVKEKASTDSSGQGHSYGVCFVDTSVGKFYVGQFADDRHCSRLRTLVA
HYPPVQVLFERGNPSGETRKLLKGCLVSAMQEGLQAASQFWDASKTLKVLAEDGYFNETK
DEDLGVPLPPVLQRMVSETDSLGLTPGEGHELALSALGACVFYLKRCLVDQELLSMANFE
EYVPVDIDVEQTKESSGCFARSRQRLVLDAITLTNLEILRNSTNGTAEGTLLEQLDNCCT
YFGKRLLKQWLCAPLCNPLAIEDRLNSIEDLMAVPDKVTEVVELLKKVPDLERLLSRIHS
IGSPLKSKDHPDSRAVLYEESTYSKKKIADFLSALEGFKVFQEVLQVIEPSVGGFKSRLL
REVLSLKGSTTEGLFPDLSAELKRWDKAFDHQKAKNTGVITPKAGFDPDYDQALADIKDT
ERSLQEYLESQRKRLGCRSVVYWGSARNRYQLEIPESIADRHVPEEYDLKSTKKGFKRYW
TKSIERLLDTMNNAEERRDVALQDCMRRLFYNFDKNYKNWQAAVDCIAVLDVLVSLTHYS
QSGEGAMCRPVVMLDEGTQPFLELRSSRHPCVLKTFFGDFIPNDVFIGCQDVEDLEDGER
SNQASCLLVTGPNMGGKSTLMRQVGLLVILAQLGCYVPAESCKFNPVDRVFTRLGASDRI
MSGESTFFVELSETSSILQHATPHSLVLLDELGRGTATYDGTAIASAVVKELAENIKCRT
LFSTHYHSLVEDFSHSAAVHLGHMACMVENECEDPSQETITFLYKFIKGACPKSYGFNAA
RLANIPEEIIQKGHKKAKEFEKTTISFRLFKEMCFLVEDPNINFLRLQPVLQKIAKI
NT seq
4134 nt
NT seq
+upstream
nt +downstream
nt
atgcccaggttccattttcccgccagcgccaaagccgggccggcgggaggcagcatgtcc
cggcagagaaccctcttcaccaagtcgccgccgctcagcgcctccaaggccaaggccggc
actgaagccgatgtgccgcctgctaaaaaggagaaagcttccccccgggagaacgagagc
ggggcccggccgcccaagaggccccaatctgccgcccgtagcccgttctccagcgcgggg
gaggggaaggtgggcaaggccgggaggagccccgcgctgagtccgacttgcgactttact
ccgggagatgtagtgtgggccaaactggaaggatatccgtggtggcccagcctggtttat
aatcaccccactgctgatgagtacctccgggggaaagggaagtcacttcgcatgcatgtc
cagttctttgatgatcctccgacaagaggctgggtaaatgtgaagtacatcaagatgtac
aatggttcggagtgcaaagaagcccagcgaggtggtgtgtacttcagtgggaagcctgaa
atccgtagggcaatggagctggcagataatgccatcccgaaatcaagagaaaggcgtttg
gaattggcagtgtgctgcgaaccttcagagccggaggaggaggaagaaatggaggtgggt
gaccaatcgacagtgagcgaggaagataaagaaaacaacagcgaggatgagaaagtgaag
aagggagcgtcgagggcaacgcgttcagccagtaccaaggccaaaaggaggcggattgtg
gtggagtctgacagtgacattgaaagctcggaggatgagtttaaacctgaccaggagggg
agcagtgacgaatgcagcagtggcattgacgagcaagatctcagcgagcccgatacggag
actgaccctgacagtccagtgaagacaccattcaagcgcaagcgtggggtgactgttggc
ccagctaaagcaaagagtgcttcctcttccccttcggaaaccccaaagagacccacagcg
gcaatgtcatcgagcacaaagtcccgactgtctgccttttctgcaccagagacctttgag
agccagtctaacggaggtgcctcgggcagtgcttcacccgtggccacgtgggaccatgag
aagctcgagtggttaaagcctggcacgaggaaggatgcaaagagacggaaggaaggcgac
cctgactacgactgtgccacactttatgtgcccgatgatttcctgtacaagtgtaccccg
ggcatgcggcgatggtgggacctcaaaacgcagatgcttgacactgtgattttctataaa
gttggcaaattttacgagctttaccacatggatgccgtcaccgctgtcaatgagctggga
ctgtcgtttatgagaggctgctgggctcactctggtttccccgagattgcttttggtcgt
ttctccgacgtcctggttcaaaagggatacaaggtggcgagggtggagcagacagagacc
cccgagatgatggaagcgcgctgcaagtccctcccgcaccccacaaagtatgaccgggtt
gtccgccgcgaggtctgtcgcataattacaaagggcacgcagacatatagtgtcttgaac
ggcagttctttggaaagctgcaacaagtacctcctgtgcgtgaaggagaaggcgagcact
gattcttcgggccagggtcactcgtacggagtctgcttcgtcgacacgtctgttggcaag
ttttacgtgggccagtttgcggatgaccggcactgctctcgtctccgaactctggtggca
cattatccgccggtgcaggtgctgttcgaaagaggcaacccatccggcgagactcggaag
ctgctgaagggctgcctcgtctctgccatgcaagaggggctgcaggcagcctcccagttc
tgggatgcatccaaaacactaaaggttctcgccgaggacggctacttcaacgaaacaaag
gatgaagatctgggcgttcccttgcctcctgttctccaacgaatggtatctgagacggac
tcactggggctcacccctggcgagggccatgaactcgccctgtcagcacttggggcctgt
gtgttttacctaaagagatgccttgtcgaccaagagctcttgtccatggcaaactttgaa
gagtacgttcctgtggacattgacgttgagcaaaccaaggagtccagcggctgctttgcc
cggagtcggcagcgcctggtactggatgccattaccctgaccaatctggagatcctgcga
aatagcactaacggcacagctgagggcaccctgcttgagcaactggacaactgctgcacc
tactttggcaagcgcttactaaagcagtggctgtgcgctcccctctgtaaccccctggcc
attgaggatcgattaaacagcattgaggacctgatggccgttcctgacaaggtcaccgag
gtggttgaactgttgaagaaagttccagacctggagcggctgctgagccggatccacagc
attggatcccccctgaagagtaaagaccacccggatagccgggctgtgctgtacgaggag
agcacctacagcaaaaagaaaatcgccgacttcctttctgcactggaaggtttcaaagtc
ttccaggaggttctccaggttattgagccttcggtcggtggctttaagtccaggttactg
agggaagttctaagtttgaagggcagtaccacggaaggcctatttccggatttgtctgca
gagttgaagagatgggacaaggcctttgaccatcagaaagccaaaaacactggagtcatt
actcccaaagcgggctttgacccagattacgaccaggcgctggctgacatcaaggacact
gaacgcagcctccaggagtacctggaaagccaacgcaaaaggctgggctgcaggagtgtg
gtttactggggctcggctcgaaaccgctaccaactggagattccagaaagtatcgccgat
cggcatgtgccggaggaatacgatctgaaatcgaccaaaaagggctttaaacgttactgg
acaaagtcgattgaaaggctcttggatacaatgaacaatgctgaggagagacgggatgtg
gctcttcaagactgcatgaggaggcttttctacaactttgacaagaactacaagaactgg
caggcagcagtggattgcatcgctgtcctcgatgttttggtgagtctaacacactacagt
cagagtggagagggagcaatgtgcagacctgttgtcatgcttgatgagggcacccagccc
ttcctggagctacgaagctcacgccacccgtgtgttttgaagactttctttggggatttc
atccctaatgatgtgttcattggctgccaggatgttgaagatttggaagatggtgagagg
agtaaccaggcttcctgcctgcttgtgacgggcccaaatatgggtggcaaatcgacactc
atgagacaggttggcctactagtcatcctggcgcaactgggatgctacgtgcctgcggag
agctgcaaatttaacccagtggacagagttttcacacgtctaggagcatctgatagaatc
atgtcaggtgaaagcactttctttgtggaactcagcgagacgtccagtatcttgcaacat
gcaacgccacattccctggtgcttttggatgaattaggccgtggtacagcaacatacgat
ggcacagcaatagcgagtgcagtggtgaaagagcttgctgaaaatatcaaatgccgcact
ctgttttctacacactaccattcccttgtggaagatttctctcactccgctgcagtccat
ttaggacatatggcttgtatggttgagaatgaatgtgaagatccaagccaggaaacaatc
acattcctatataaatttatcaaaggagcctgtccaaaaagttatggatttaatgcagca
agacttgcaaacattcctgaagaaattattcaaaaaggtcacaagaaagctaaagaattt
gagaagactactatttcctttagacttttcaaggagatgtgctttttggttgaagaccca
aatattaacttcctcagactacagccagtactgcagaagattgccaaaatctga
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