Scyliorhinus canicula (smaller spotted catshark): 119974760
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Entry
119974760 CDS
T11175
Name
(RefSeq) E3 ubiquitin-protein ligase RNF43 isoform X1
KO
K15694
E3 ubiquitin-protein ligase RNF43 [EC:
2.3.2.27
]
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Pathway
scau04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
119974760
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
scau04121
]
119974760
Enzymes [BR:
scau01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
119974760
Ubiquitin system [BR:
scau04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
119974760
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ZNRF_3_ecto
zf-RING_2
zf-C3HC4_2
zf-RING_11
zf-C3HC4
zf-rbx1
zf-RING_5
zf-RING_UBOX
Zn_ribbon_IFT122_C
Motif
Other DBs
NCBI-GeneID:
119974760
NCBI-ProteinID:
XP_038669893
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Position
12:complement(121744682..121949431)
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AA seq
862 aa
AA seq
DB search
MRSAALLLALQWLWSAALAAAAARPELESTAAAAETVAEIEVVQYRPSQNGVVANNSTLR
LHGHFAGAGMRVAAEGKLLQFHPLWLCNTSEDEQQEYDFVSMVKLERPDRDPHPCLSLFN
KAKFAIQRGASAVIFDVTDDASAVGQLKQNQDYPLLRPVILIQGQDAALLMKVINTNGEA
IVKIHVKSDTLGRPAYDVGILMTLIVAFSVVVMILAVRIKCKQNRTRNSLQQQTINAISR
LATRRYQSRCRSQTHERQSSLDSQSSSISEPVCAICLEEFAEGQDVRIISCFHEFHKECV
DPWLLQHRTCPLCMYNIIEGNSSVAQHEVHDQANPAAQPNQRIHLLRRYPGHAHLHRPNT
AIPSRAPHLNNPRTPGMQIAPPGHYFVAPEVYRVGFNTMRYVATRPQQSSALHRCNYQHA
DGQGVFYRHHRPFTIRKGPPWPDQALHRPCLHKSPCRPQQLSACSAPLSSHNLKPNCAPA
HSQITSNHDNHSCSGDSFGINCSVRSGYLADSPGSDSSSGPCHCSSSDSTLDCTDISNHC
TYGSQSTFRSSLSSEYDPLVYCGAGGESMQCSSFEEQRPKSLDSVSGSQEEQVLSHTHYH
HHRHHHYGDAHPSPEEHCMSPGRSPSQKQENEQLEELLSDIKHCQQQVEFSCQSQYTPHP
VQCHCLERHLLLPPGLCLPETSLQNVDVERGESSDVCAKPDQVPSENKPNRTSNRRRRKR
RKRSFQMDQPVVYFHQDCDTLEGCGVHIHYGNSGRQCHLPHIQPSVPIPLILNNGASNEW
GFPFCECPDPLCQQRRYQVGSEPQLAGEQHRNNVDPDHPFQDSCTEGYCDGGPVQDESFY
CQETPKSPGSESNVGEICEEVV
NT seq
2589 nt
NT seq
+upstream
nt +downstream
nt
atgaggagcgcagcgctgctgctggctctgcaatggctgtggagcgcggcgctggcggcg
gcggcggcgagacccgagctcgagtcgacagccgcggcggcggagacagtggcggagatc
gaggtggttcagtatcggcccagtcagaacggtgtggtggccaacaacagcaccctccgc
cttcacgggcacttcgccggagcgggcatgagagtggcagctgagggcaaactgctgcag
tttcatcctctgtggctgtgtaacaccagtgaagatgaacaacaagaatatgactttgtc
agtatggtcaaactggagcgtcctgaccgggacccacatccctgtctctccctcttcaac
aaggccaagtttgccattcagagaggtgcctcggcagtgatctttgatgtaacagacgat
gcaagtgctgtgggtcagctaaagcagaatcaagactatcctttgcttcgtccagttatc
ctgatccaaggccaggatgctgccctgctgatgaaggtcatcaacactaatggtgaagca
atagtcaaaattcacgtcaagagcgacacactgggacggccagcctacgacgtggggatc
ctaatgactctgattgttgctttctcagttgttgtcatgatcctggcggtgagaatcaag
tgcaagcagaatcggactcggaattccttgcagcagcagactatcaatgcaatcagccgg
ctagctactcgacgttaccaatcccgatgccggtctcaaactcatgagcgtcaaagcagc
ctagattctcagagtagcagcatatcggagccagtgtgtgctatctgtctggaggagttt
gctgaaggacaggatgtacggataatttcttgtttccatgaattccacaaggaatgtgtg
gatccctggcttctccagcatcgcacctgccccctctgcatgtacaacatcatcgaaggt
aattcatcagttgcacaacatgaagtccatgaccaagccaatccagctgctcaaccaaac
cagcgtatccatttgctcagacgataccctggacatgcgcaccttcacagaccgaacact
gccattccttccagggctccgcatttgaacaatcccagaactccaggaatgcaaattgca
ccccctggccattactttgttgctccagaagtctaccgcgtaggatttaacacaatgaga
tatgtggccacaaggccacaacagtcttcagccttgcacaggtgcaactatcagcatgct
gatggccaaggagttttctacagacaccatagaccctttactattcgaaaaggtccacct
tggccagaccaagctcttcatcggccatgtctacataaatctccctgcaggccgcagcaa
ctttctgcatgcagtgcaccactgtcttcacataatttaaagcctaactgtgctcctgct
cattcacagatcaccagcaaccatgacaaccatagctgctcaggggacagttttggtatc
aattgttcagtgcgcagtggatacctggctgacagcccaggtagtgactccagttcaggt
ccctgccattgctcctccagtgattcaacactggattgtacggacatcagtaatcattgt
acttatgggagccaatccacattccgtagctctctgagcagtgaatatgatccccttgtg
tactgtggggcaggtggagagagtatgcagtgttcgtcctttgaagaacagagacccaag
tcactggactcggttagtggttctcaggaagaacaggtgcttagccacactcactaccac
catcatcggcaccatcactacggcgatgctcacccaagtcctgaagaacactgtatgagt
cctggcaggagcccatcgcaaaagcaggaaaatgagcagttagaggaactcctgagtgac
attaaacactgccagcaacaggtagagttcagctgtcaatcccagtacacccctcaccct
gtccaatgtcactgcttggagcggcacttgttgcttccccctggactctgccttcccgaa
acctcactgcaaaatgtggacgttgaaaggggtgagagcagcgacgtatgtgccaaaccg
gaccaagtgccttcagaaaataaacccaatcggaccagcaacaggaggaggaggaagaga
aggaaaaggagtttccagatggatcaaccagtggtttacttccatcaggactgtgatacc
ctggagggctgtggagtgcatattcactatggtaacagtgggaggcagtgccaccttcca
catattcagccatcagtgccaatccctttaatcctcaacaatggagcctctaatgaatgg
ggtttcccattctgtgagtgccccgaccccctctgccagcaacgacggtatcaggttggt
tctgagccgcagttggctggagagcagcacagaaacaacgtggatccagaccatccattt
caagatagctgtactgaaggatactgtgatggaggtccagtacaagatgaatccttctac
tgccaggaaacccccaaaagtccaggctcggaatcaaacgtgggagagatatgtgaagaa
gtcgtgtag
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