Scyliorhinus canicula (smaller spotted catshark): 119974879
Help
Entry
119974879 CDS
T11175
Symbol
prpf8
Name
(RefSeq) pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Pathway
scau03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119974879 (prpf8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
scau03041
]
119974879 (prpf8)
Spliceosome [BR:
scau03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
119974879 (prpf8)
Complex C
U5 SnRNP specific factors
119974879 (prpf8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
119974879
NCBI-ProteinID:
XP_038670130
LinkDB
All DBs
Position
12:133741835..133785127
Genome browser
AA seq
2333 aa
AA seq
DB search
MAAFQYRAAPGPNPVPVPVPDYMSEEKLQEKARKWQQLQAKRYAEKRKFGFVDAQKEDMP
PEHVRKIIRDHGDMTNRKFRHDKRVYLGALKYMPHAVLKLLENMPMPWEQIRDVSVLYHI
TGAISFVNEIPWVIEPVYISQWGTMWIMMRREKRDRRHFKRMRFPPFDDEEPPLDYADNI
LDVEPLEAIQMELDTEEDGPVAEWLYDHQPLKDNPKYVNGSTYRRWQFTLPMMSTLYRLA
NQLLTDLVDDNYFYLFDLKAFFTSKALNMAIPGGPKFEPLVRDVNLQDEDWNEFNDINKI
IIRQPIRTEYKIAFPYLYNNLPHHVHLTWYHTPNVVFIKTEDPDLPAFYFDPLINPISHR
HSVKSQEPLPDDDEEFELPDCMEPFLKESPLYSDHTANGIALLWAPRPFNLRSGKTRRAL
DIPLVKNWYREHCPAGQPVKVRVSYQKLLKYYVLNALKHRPPKAQKKRYLFRSFKSTKFF
QSTKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRFGN
AFHLCREVLRLTKLVVDSHVQYRLGNVDAFQLSDGLQYIFAHVGQLTGMYRYKYKLMRQI
RMCKDLKHLIYYRFNTGPVGKGPGCGFWAAGWRVWLFFMRGITPLLERWLGNLLARQFEG
RHSKGVAKTVTKQRVESHFDLELRAAVMHDILDMMPEGIKQNKARTILQHLSEAWRCWKA
NIPWKVPGLPTPIENMILRYVKAKADWWTNTAHYNRERIRRGATVDKTVCKKNLGRLTRL
YLKAEQERQHNYLKDGPYITAEEAVAIYTTTVHWLESRRFSPIPFPPLSYKHDTKLLILA
LERLKEAYSVKSRLNQSQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIEFMDLY
SHLVPVYDVEPLEKITDAYLDQYLWYEADKRRLFPPWIKPADTEPPPSLVYKWCQGINNL
QDVWETADGECNVMLESRFEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVINYKDM
NHTNSYGIIRGLQFASFIVQYYGLVLDLLVLGLHRASEMAGPPQMPNDFLSYQDVATEVA
HPVRLFCRYIERIHIFFRFSADEARDLIQRYLTEHPDPNNENIVGYNNKKCWPRDARMRL
MKHDVNLGRAVFWDIKNRLPRSVTTIQWENSFVSVYSKDNPNLLFNMSGFECRILPKCRT
SYEEFTHKDGVWNLQNEVTKERTAQCFLRVDDESMQRFHNRVRQILMASGSTTFTKIVNK
WNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPKEL
GGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQPWESEFIDS
QRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRTDF
KQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPTWEGLF
WEKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFM
HGKIPTLKISLIQIFRAHLWQKIHESIVMDLCQVFDQELDALEIETVQKETIHPRKSYKM
NSSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYWIDIQLRWGDYDSHDIERYARA
KFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSAYGNWFPGAKPLIQQAMAKIMKANPALYV
LRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKP
INGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQPKQII
VTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEKFGDLILKATEPQMVLFNLYDD
WLKTISSYTAFSRLILILRALHVNNDRAKVILKPDKTTITEPHHIWPTLTDEEWIKVEVQ
LKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSQQRQQIAEIEKQTKEQSQLTAT
QTRTVNKHGDEIITSTTSNYETQTFSSKTEWRVRAISAANLHLRTNHIYVSSDDIKETGY
TYILPKNVLKKFICISDLRAQIAGYLYGVSPPDNPQVKEIRCIVMVPQWGTHQTVHLPNQ
LPQHEYLKEMEPLGWIHTQPNESPQLSPQDVTTHAKVMADNPSWDGEKTIIITCSFTPGS
CTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPGQSSWNYN
FMGVRHDPNMKYELHLANPKEFYHEVHRPSHFLNFASLQEGEIYNADREDMYS
NT seq
7002 nt
NT seq
+upstream
nt +downstream
nt
atggcagcatttcagtatagggccgcacctgggcccaatccagttccagtccctgtacct
gattacatgtctgaggaaaaactgcaagagaaagccaggaaatggcagcaacttcaggct
aaacgatatgctgagaagagaaagtttggttttgtggatgctcaaaaggaggacatgccc
cctgagcatgtccgaaagataattcgtgaccatggtgacatgacaaaccgcaaattcaga
catgacaagagagtctacctcggtgctctgaaatacatgccacatgctgttctgaaacta
ctggagaacatgcccatgccatgggagcagatcagggatgtttcggttttgtaccacatc
actggtgcaatctcatttgttaatgagatcccatgggttattgaaccagtttacatatct
cagtggggaaccatgtggattatgatgagacgtgaaaaacgtgatagacgacattttaag
aggatgcggtttcctccttttgatgatgaggagcctccactggactatgcagacaatata
cttgacgtggagccactcgaagcaattcagatggaacttgatacggaagaggacggacca
gtggctgagtggttatatgatcaccaaccactgaaagacaacccaaagtatgtgaatgga
tctacttatcgtcgctggcagtttactttgccaatgatgtccactctttatcgcctggct
aatcagttgctaactgatttagtggatgacaactacttctatctgtttgatctgaaagca
ttttttacttccaaagctctcaacatggcaattccaggtggaccaaagtttgagcctcta
gttcgggatgtgaatctacaggatgaagactggaacgaattcaatgacatcaacaagatc
atcattagacaaccaatcagaacagaatacaaaatagcattcccatacctgtacaataac
ctaccccatcatgttcatctcacctggtaccacacaccaaatgttgtgttcattaaaact
gaagatccagatttgccagcgttttactttgacccgttgattaatccaatctctcacaga
cactctgttaagagccaggaaccactacctgatgacgatgaagagtttgaacttcctgat
tgcatggaaccattcctgaaagaatctcctttgtattctgatcatactgctaatggcata
gcattgctttgggcaccaagaccttttaacttgaggtctggaaaaacaaggagagcactg
gacattccgttagttaagaactggtaccgtgagcactgtccagcagggcagccagtcaaa
gttagggtttcttaccagaaactcctgaagtactatgtactgaatgcacttaaacacaga
ccacccaaagcacaaaagaaaaggtacttattccgttcgttcaaatcaacaaaatttttc
cagtcgaccaaacttgattgggtagaggtgggcctccaggtgtgtcgccaaggttacaac
atgctgaacttgttaatccaccgcaagaatctgaattatctgcatctagactacaacttc
aacctgaagccagtcaaaaccctcactactaaggaacgtaagaagtccagatttggcaat
gcgttccatttgtgccgtgaggtgctacgcttgacaaagcttgttgttgacagtcatgta
cagtacaggttggggaatgtggatgccttccagttgtcagatggattgcaatatatcttt
gcacatgttggacaactgactggaatgtacaggtataagtacaagctgatgagacagatc
cgaatgtgtaaagatttgaagcaccttatctattacagatttaacacagggccagtaggc
aaaggaccaggctgtggattctgggctgctggctggagagtgtggctgttcttcatgagg
ggtataactcctctgttagagaggtggttgggaaacctgcttgccagacagtttgaaggt
cgacattccaaaggggtagctaagactgtgaccaaacagcgtgtggagtctcactttgac
ctggagttacgggcagctgttatgcacgatatcctagatatgatgcctgaaggaatcaaa
caaaacaaggccaggacaatcttgcagcatttgagtgaagcttggagatgctggaaggca
aatattccttggaaggttccaggtctgccaactccaattgagaacatgatccttcggtac
gtgaaagccaaagctgactggtggacaaatactgctcattacaacagagaacgtattcgt
cgtggagcaactgtagacaaaactgtgtgcaagaagaacttgggtcgcttaaccagattg
tacttgaaggcagaacaggaaagacagcataactacctgaaggatggtccctacatcact
gctgaagaagctgttgccatctacaccaccactgtgcattggctagagagcaggcgcttc
tctccaattcctttcccccctctttcctacaagcacgatacaaaacttctgatcttggct
ctggaaagacttaaagaagcttacagtgtgaaatcaaggctgaaccagtcacagagggag
gaactgggtttaattgaacaggcctatgacaaccctcatgaggctttatccaggatcaaa
cgacacttgctcacacagagagctttcaaagaggttggaattgagttcatggatttgtac
agccacctggtgccagtttatgatgttgaaccattagagaagatcactgatgcttacctt
gatcagtacttgtggtatgaagctgacaagcgaaggctattccctccttggattaagcca
gctgatacagaaccgcctccatcacttgtatacaagtggtgccagggcatcaacaatctt
caggacgtgtgggagacagctgatggtgaatgcaatgtcatgttagagtccagatttgag
aagatgtatgagaaaattgatctgactttgctgaacaggttgctgcgtctcattgtggat
cacaacattgctgattacatgacagcaaagaacaacgttgtcatcaattataaggacatg
aaccacaccaattcctatggcattattcgagggctccagtttgcctcctttattgtccag
tactacgggctggtgctggatctgcttgtattgggtctccacagagccagtgaaatggct
ggtccaccgcaaatgccaaatgattttctgagttaccaggacgttgccacagaagtagct
catcctgtcagacttttctgcagatatattgagcgtattcacatttttttcagattttca
gctgatgaagccagagacctgattcagcgctaccttactgaacatcccgatccaaacaat
gagaacattgtagggtacaataacaagaagtgttggccaagagatgcacgtatgaggctt
atgaagcacgatgtcaaccttggtcgagcagtgttttgggacatcaagaatcggctgccg
aggtctgttaccaccattcagtgggagaacagttttgtatctgtatacagcaaagacaat
cccaacctgctattcaacatgtctggctttgagtgccgcattcttcccaaatgccgtaca
agctatgaggaattcactcacaaagatggagtctggaacttacaaaatgaggttaccaaa
gagcgtacagctcagtgcttcctcagagtggatgacgaatctatgcaacggttccataac
agagtacgccaaattctcatggcctctggttctaccaccttcactaagattgtcaataag
tggaacaccgctctgattggcttgatgacctatttccgtgaagcagttgttaacactcag
gagttattggacctgttggtgaaatgtgagaacaagattcaaacccgtattaagattggt
ctgaattccaaaatgccaagtcgtttccctccagtggtattctacacccctaaggagctg
ggtggacttggcatgctctccatgggtcacgttctcatcccacagtctgacttgaggtgg
tcgaagcagaccgatgtcggcatcactcatttccgatcaggtatgagtcatgaagaggat
caactgattcctaatctttatcgttacattcagccttgggagagtgagttcattgattcg
cagagagtgtgggcagaatatgcactgaaacgacaggaagctattgcacaaaataggcgc
ctaacgttggaagatctggaagactcctgggacagaggtattccacgtattaacacgctg
ttccagaaggacagacacacactggcttatgataagggctggagagttagaactgatttt
aaacagtatcaggtgttaaagcagaatcctttctggtggactcatcagagacatgatgga
aagctgtggaatttgaacaactaccgtacagacatgatccaagcactgggaggtgttgaa
ggcattctggagcacacactcttcaagggaacttattttcctacgtgggagggcctgttc
tgggagaaggcaagtggttttgaggaatcgatgaagtggaagaagctgacgaatgcccag
cggtctggtttgaaccagattcccaacagaagattcactctgtggtggtcaccaaccatc
aacagagctaatgtttatgtaggtttccaggtgcagttagatctgacaggaatcttcatg
cacggcaaaatccccacactcaagatttctttaatccagatcttcagagcccatttgtgg
cagaagattcatgagagcattgttatggacttgtgtcaggtctttgatcaagagttggat
gctctggagattgagactgtgcagaaagagaccattcaccccagaaaatcctacaaaatg
aactcctcctgtgctgatatcctgctgtttgcttcgtacaagtggaatgtttccagacca
tcactccttgctgactcaaaagatgtaatggatagcactactacccaaaagtactggata
gacatccagttgcgatggggtgactatgattctcatgatattgagagatacgccagagcc
aagttcttggactatacaacagataacatgagtatctacccctcaccgactggtgtgttg
attgctattgatctggcctataatctgcatagtgcttatggtaactggtttcctggtgcc
aagccactgatccaacaggctatggcaaaaatcatgaaggctaaccctgctttatatgtg
ttgagagagcgtattcgaaagggtctacagctgtactcttccgagccaactgaaccttac
ctatcctcacagaattatggtgaactcttctccaaccaaatcatatggtttgtggatgat
acaaatgtgtaccgggtcaccattcataagacatttgaaggtaacttgacaacaaagccc
attaatggagccattttcatcttcaatcccaggacaggacagttgttccttaaaattatc
cacacttcagtttgggctgggcagaaacgtttgggccagctggcaaaatggaaaactgct
gaagaagtggctgccttgatccgatcgcttccagttgaagaacagcctaaacagatcatt
gttacaaggaagggcatgttagatccactggaagttcatttgctggatttccccaacatt
gtgatcaaaggatctgagctgcagttgcctttccaggcttgcctaaaagtggagaagttt
ggggatttgattttaaaggcaaccgaaccccagatggtgctctttaacttgtatgatgat
tggctgaagaccatttcctcctatactgcattctctcggctgattttaattcttcgagca
ctgcatgtgaacaatgatcgcgcaaaggtcattctgaaacctgacaaaactacaataaca
gagcctcatcacatctggccaactttgacagatgaagaatggataaaggtggaagtgcag
ttgaaagatctcattctggctgactatggcaagaaaaacaatgtaaatgtggcatctttg
actcaatcggagattcgtgacattattttgggtatggagatttctgcgccttcgcagcag
aggcaacagattgctgaaattgaaaagcagaccaaagagcagtctcagctaacagccaca
cagacacgcactgtgaacaaacatggtgatgaaatcatcacttcaacaaccagcaattac
gagacccaaactttctcatccaaaactgaatggagagtcagagcgatatctgctgccaac
cttcatctgcgtaccaatcacatctatgtttcctctgatgacatcaaagagacaggctat
acttacatcctgcccaagaatgtgctgaagaaatttatctgcatttcagacttgagagca
cagattgcaggatatctgtatggtgtgagtcctccggataacccccaagtgaaggaaatc
aggtgtattgtgatggtaccacaatggggaacccatcagactgtgcatctgcctaaccag
ctgccacaacatgaatatctgaaggaaatggaacctcttggttggattcacacacaacct
aatgagtctcctcagttgtcaccacaagatgtcaccacccatgctaaagtaatggctgac
aatccatcttgggatggagagaagaccatcataataacctgcagctttactccaggttcc
tgcacactgacggcatacaaacttactccaagtgggtatgaatggggtagacagaacaca
gacaagggaaacaaccctaaggggtacctgccttcccactatgaaagggtacagatgttg
ttgtcggatagattccttggttttttcatggtccctggccagagctcctggaactataac
ttcatgggtgttcgccatgatcccaacatgaaatatgagctgcatttggccaaccctaaa
gagttttaccatgaagttcacagaccatctcacttcttgaactttgcttcactgcaagag
ggggagatctacaatgcagacagagaggacatgtactcctag
DBGET
integrated database retrieval system
