Scyliorhinus canicula (smaller spotted catshark): 119974987
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Entry
119974987 CDS
T11175
Symbol
ddx52
Name
(RefSeq) probable ATP-dependent RNA helicase DDX52 isoform X1
KO
K14779
ATP-dependent RNA helicase DDX52/ROK1 [EC:
5.6.2.7
]
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
scau03009
]
119974987 (ddx52)
Enzymes [BR:
scau01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
119974987 (ddx52)
Ribosome biogenesis [BR:
scau03009
]
Eukaryotic type
90S particles
Helicases
119974987 (ddx52)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
SNF2-rel_dom
AAA_19
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
119974987
NCBI-ProteinID:
XP_038670335
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Position
12:complement(145730997..145764036)
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AA seq
611 aa
AA seq
DB search
MAMEQFDLFRALGAGARFDWKRFGRDAERLRVTKSSSANLSENALDLDFFNSQRTKICKP
VVSRQKSNVEKEDSLGKRKLETSVSEKRKRRKKRNSAETETAGDIFANTKDDDGIMLMSS
LGSKIKSNTSDRGTETSAEKLEHQRREKIITFRRKHRIYVGGTDIPEPVATFEKLLQEYK
VHPKIIRHIQEAGFQMPTPIQMQAIPIMLHNREILACAPTGSGKTLAFCIPLLTCLKQPM
NKGFRALILSPTRELANQTHRELVKLSEGIGFRIHMINKTGEAAKRFGPKTSSKFDILVT
TPNRLIYLLKQEPPAVDLSRVEWLVVDESDKLFEDGKSGFRDQLATIFLACTSHNVRRAM
FSATFAFDVEQWCKLNLDNVVSVSIGERNSAVETVEQELLFVGTETGKLLAMRDLVKKGF
SPPVLVFVQSIERAKELFRELIYEGINVEVIHAERTQQQRDNVVYSFRAGKIWVLICTAL
MARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGHQGKAVTFFTEDDKPLLRSIANVI
KQAGCPVPDYMMQINKLRSKQKKRMIKNPIKRADITTTPKYFLEKAARKNKMIQKSKKQE
KSHPGLPATTA
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atggcgatggagcagttcgatttgttccgtgcgctgggcgccggcgcccgattcgactgg
aagcgcttcgggcgggacgccgagaggctgcgggtaacaaagtcaagcagcgccaattta
agtgaaaacgctctggaccttgacttttttaacagtcagcgtactaaaatctgcaaacca
gtggtcagtagacagaagagcaatgtggagaaagaggattctctcggaaaaagaaaactt
gagacaagtgtgtcagaaaagaggaaaaggagaaaaaagaggaactcggcagaaaccgaa
acagcgggcgacatttttgccaacaccaaagatgatgatgggataatgctgatgtcgtca
ctgggaagcaagatcaagagtaatactagcgataggggcacagaaaccagtgctgagaaa
ctggaacatcaacgacgagaaaagataattacattccgacgtaagcatcggatttatgtg
ggtggaacggatattcctgagccagtcgccacctttgaaaagctcctacaagaatataag
gtgcacccaaagattattcggcacatacaggaagctggattccaaatgcccaccccaata
cagatgcaagccataccaatcatgctgcataatcgggaaatcctggcctgtgccccaact
ggatcaggaaagacattggccttttgcattccacttttgacttgtctaaaacagccaatg
aacaagggtttcagggcactgatattatctcctactcgtgagcttgccaaccagactcat
cgggaactagtcaaactctctgaaggcattgggttcagaattcacatgatcaacaaaaca
ggtgaagccgccaaaaggtttggccctaagacatcaagtaaatttgacattttggtgacc
actccaaacagactgatttatttgttaaagcaggaaccccctgctgtggacctcagcagg
gtggagtggctggttgttgatgaatcggataagttgtttgaagatggcaaatctggattc
cgagatcagttagccactatcttcctggcatgtacatctcacaatgtgcggcgagctatg
ttcagtgccacatttgcatttgatgttgaacaatggtgcaaactgaacttggacaacgta
gtatctgtgtcgatcggagaaaggaattctgctgtggagactgtggagcaggagttactt
tttgtgggtaccgaaactgggaaactgctggcaatgcgagacctcgttaaaaagggcttt
tcacctccagtactagttttcgttcagtcgattgaaagagcaaaggaactatttcgtgag
ttaatctatgagggcattaacgttgaggttatccacgcagaaagaacacagcaacagaga
gataatgtagtgtacagcttcagagcaggaaagatttgggtgctcatttgcactgcactc
atggctcgtggtattgattttaaaggagtgaatctagtcatcaactacgactttccaact
agttctgttgagtacattcatagaataggacgtactggaagagctggtcatcaaggaaag
gctgttacatttttcacagaagatgataaaccacttttaaggagtatcgcaaatgttatc
aaacaagctggctgccctgtaccagactacatgatgcaaataaacaaactgcgaagtaaa
caaaagaaaagaatgatcaaaaatccaatcaaacgagcggatatcacgaccacaccaaaa
tacttcctagaaaaggcagccaggaagaataaaatgattcagaagagcaagaagcaagaa
aaatcccatcccggtctgccagccaccaccgcttaa
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