Scyliorhinus canicula (smaller spotted catshark): 119975089
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Entry
119975089 CDS
T11175
Symbol
rpa1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit
KO
K07466
replication factor A1
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Pathway
scau03030
DNA replication
scau03420
Nucleotide excision repair
scau03430
Mismatch repair
scau03440
Homologous recombination
scau03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
119975089 (rpa1)
03420 Nucleotide excision repair
119975089 (rpa1)
03430 Mismatch repair
119975089 (rpa1)
03440 Homologous recombination
119975089 (rpa1)
03460 Fanconi anemia pathway
119975089 (rpa1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
scau03000
]
119975089 (rpa1)
03032 DNA replication proteins [BR:
scau03032
]
119975089 (rpa1)
03400 DNA repair and recombination proteins [BR:
scau03400
]
119975089 (rpa1)
Transcription factors [BR:
scau03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
119975089 (rpa1)
DNA replication proteins [BR:
scau03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
119975089 (rpa1)
DNA repair and recombination proteins [BR:
scau03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
119975089 (rpa1)
MMR (mismatch excision repair)
119975089 (rpa1)
DSBR (double strand breaks repair)
HR (homologous recombination)
119975089 (rpa1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
Motif
Other DBs
NCBI-GeneID:
119975089
NCBI-ProteinID:
XP_038670532
LinkDB
All DBs
Position
12:154487794..154560309
Genome browser
AA seq
613 aa
AA seq
DB search
MAFRLSEGAISSIVQGGTPSQPLLQVISIRRITNGPPRYRVLMSDGINTLSSFLLATQLN
YMGDEGLIAVNCVCQINRFICNTMKDGRRAVVIVDLKVVKTADQVNGKIGNPVPINEGQT
QQPAALANQPAVKPMQNSYASDAASVHSTLAKSESRTSNKFGGIRGLPSSAGGSQTKVVP
IACLNPYQSKWTIRARVTNKSQIRTWSNSRGEGKLFSIELLDESGEIRATVFTEQVDKYF
PLIEVNKVYFVSKGTLKTANKQYTSVKNDYEMTFNNDTTVIPCDDVDDLPTVQFDFVPID
QLESKNKDTMLDVIGVCKSFEDVTKITVRSSNREVSKRNVYLLDMSGKIVSATLWGEDAE
KFNGSQQPVVAIKGVRLSDFGGRSLSVLSSSSVLINPDIPEAFKLRAWFDKEGQAIEGTS
ISDTKGGSFGGGSTNWKMLLEVKNENLGHGDKADYYTTVGTIVYLKKENCMYQACPTAEC
NKKVVDQQNGLYRCEKCDREFPNFKYRMILSVNLADFGENQWVTCFQETGEAILGQNAAY
LGELKDSNEQAFEEIFQNANFRSYTCRVRVKLETYNDESRIKATMMDVKPVDHKEYSKRL
IMNIRKHAATQAC
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atggcgtttcgactgtcggagggagccatatcgtcaatagttcaaggaggaactccttca
cagccacttttacaagttattagtatccgacgcattacaaatgggcccccaaggtatcgt
gtactaatgagtgatggaatcaatacactgtcatctttcctgctagcaactcagctgaac
tacatgggtgatgagggtcttattgcagtaaactgtgtctgccagatcaaccggttcatc
tgtaacacaatgaaggatggaagacgtgcagtagtgatcgtcgacttgaaagttgtcaaa
acagctgaccaggtgaatgggaaaattggtaatccagtgccaatcaacgaaggtcagaca
cagcagccagctgctcttgccaaccagccagcagttaaaccaatgcaaaatagctatgca
tctgatgctgcttcagtccacagtactctggcaaaaagtgagagcaggacatcaaataag
tttggtggtatcagaggactacccagcagcgctggaggatcacagaccaaagtggtaccc
attgcctgccttaacccctaccaatccaagtggacaatccgggctcgtgttaccaataag
agtcagattagaacatggagcaactcccgtggagagggaaagctattttccattgagctg
ctggatgagagtggtgaaattagagccacagttttcacagagcaggtggataagtacttc
ccacttattgaagtgaataaggtatattttgtgtcgaaaggaacattgaagacggccaat
aaacagtacacgtcagtgaagaacgattatgagatgacttttaataatgacaccaccgtg
atcccttgtgatgatgtggatgatttgcccacagtccagtttgattttgtaccaatagat
cagctagaaagcaagaataaagacacaatgcttgatgttatcggagtctgcaagtcattt
gaagatgtcactaagataactgtgaggtcaagcaatcgagaggtatccaagagaaatgtt
tatctgttggatatgagtggaaaaattgtcagtgcaacactgtggggtgaagatgctgag
aagttcaatggatcacaacaaccagtggtggctattaaaggagtccggctttcagatttc
ggtggcagatccctatctgtattgtcatccagcagcgtattgattaaccctgatatccca
gaggcttttaaactgagggcatggtttgataaggagggccaagcgatagaagggacatcc
atttcagacacaaagggtggttcttttggtggaggaagcacaaactggaagatgctgctt
gaggttaaaaatgagaatttgggtcatggagataaggctgactattacaccactgttggt
acaattgtgtatctgaagaaggaaaactgcatgtaccaggcatgtcccactgcagagtgc
aacaagaaggttgttgatcaacagaatggcctttatagatgtgagaagtgtgatcgtgag
tttcccaacttcaaatatcgtatgatcttatcagtaaatctagcagactttggagaaaac
cagtgggtgacatgtttccaggagactggggaggcaattcttggtcagaatgctgcttat
cttggagagctgaaggactcaaatgaacaagcctttgaggagattttccagaatgcgaac
ttccggtcatatacctgcagggttcgtgtcaaactcgaaacgtacaacgatgaatctcgc
atcaaagcgacaatgatggatgtgaaaccagtggaccataaggagtacagcaagcgactg
ataatgaatattaggaaacatgcagctacacaagcttgctga
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