Scyliorhinus canicula (smaller spotted catshark): 119975509
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Entry
119975509 CDS
T11175
Name
(RefSeq) spliceosome RNA helicase DDX39B isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Pathway
scau03013
Nucleocytoplasmic transport
scau03015
mRNA surveillance pathway
scau03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119975509
09122 Translation
03013 Nucleocytoplasmic transport
119975509
03015 mRNA surveillance pathway
119975509
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scau03019
]
119975509
03041 Spliceosome [BR:
scau03041
]
119975509
Enzymes [BR:
scau01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
119975509
Messenger RNA biogenesis [BR:
scau03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
119975509
Spliceosome [BR:
scau03041
]
Complex C
Other components
EJC/TREX
119975509
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
119975509
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
119975509
NCBI-ProteinID:
XP_038671205
LinkDB
All DBs
Position
13:14166266..14234414
Genome browser
AA seq
428 aa
AA seq
DB search
MAENDVDNELLDYEDDEVENQAAGDSSEVPLKKDVKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQISVLVMC
HTRELAFQISKEYERFSKYMPSVKVAVFFGGLSIKKDEELLKKNCPHIVVGTPGRILALA
RNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCR
KFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRC
IALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIVF
NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDI
SSYIEQSR
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggcagaaaatgacgttgataatgagctcttggactacgaagatgatgaggttgagaat
caagcggctggcgattcctcggaggtgccccttaagaaggacgtgaagggctcgtacgtt
tccatccacagctccgggttccgggacttcctgctgaaaccagagttgctgcgcgccatt
gtcgactgcggctttgaacacccctctgaagtgcaacacgaatgcataccccaagcaatt
ctgggcatggatgtcctgtgccaggccaagtctggcatgggaaaaacggcagtgtttgtc
ttggctactctccaacaacttgaacctgtcactggacaaatttcagtcctggtgatgtgc
cacactcgagaactggcattccaaatcagcaaggaatatgaacggttctccaagtacatg
cctagcgtgaaggttgcggtgttttttggcgggctctccattaagaaggacgaggagttg
ttgaagaagaactgcccacacattgtggtgggcacccctggcaggatcctggcactggct
cgcaacaagtctctgaacctcaaacacatcaagcacttcatcctggacgaatgtgacaag
atgcttgagcagctcgacatgcgtcgagatgtccaggagatctttcgcatgacccctcat
gagaagcaggtcatgatgttcagtgccacactaagcaaggagatccgccccgtctgccgc
aagttcatgcaagatccgatggagatctttgtggacgacgaaacaaagctcaccctgcac
ggactgcagcagtactatgtgaagctcaaagacaacgaaaagaaccgcaagctctttgac
ctgcttgatgttctggagttcaaccaggtggtgatcttcgtaaagtcggtgcagcgctgc
atcgccttagcacagctcttggtcgagcagaacttccccgccatcgccattcaccgaggc
atgccccaggaggagaggttatcccgataccagcagtttaaggatttccagcggcggatt
ctggttgccaccaacttgtttggccgtggcatggacattgagcgagtcaacattgtattt
aactatgacatgcctgaagattccgacacctacttacacagggtggccagagctggccgt
ttcggcactaagggactggctatcacattcgtgtcggatgagaatgatgccaagatcctt
aacgatgtgcaggacaggtttgaagtcaacatcagtgagctgcctgatgagatcgacatt
tcttcatacattgaacaaagcagatag
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