Scyliorhinus canicula (smaller spotted catshark): 119975939
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Entry
119975939 CDS
T11175
Name
(RefSeq) collagen alpha-4(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Pathway
scau04382
Cornified envelope formation
scau04510
Focal adhesion
scau04512
ECM-receptor interaction
scau04518
Integrin signaling
scau04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
119975939
04518 Integrin signaling
119975939
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
119975939
09142 Cell motility
04820 Cytoskeleton in muscle cells
119975939
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
119975939
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
scau04147
]
119975939
00536 Glycosaminoglycan binding proteins [BR:
scau00536
]
119975939
Exosome [BR:
scau04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
119975939
Glycosaminoglycan binding proteins [BR:
scau00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
119975939
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
119975939
NCBI-ProteinID:
XP_038671831
LinkDB
All DBs
Position
13:complement(135196593..135440932)
Genome browser
AA seq
1673 aa
AA seq
DB search
MAPSGFRCPVRMVPFSLWLLLLQFSLLCGAHAGQIDYTGPCGGRDCSVCQCFPAKGAQGQ
PGSLGRHGPQGSSGLQGPRGPPGLKGQNGDRGSPGFAGIKGDRGPTGVPGFLGLDGIPGF
PGLQGARGPPGLDGCNGSRGDPGLPGSEGFPGRPGLPGMQGPKGPKGDSITATFSYRGLP
GDQGFPGPIGYPGLPGIAGLRGIEGQRGPPGFQGHPGSQGLPGDQGMGFPGQKGEKGEQG
DPGHVELNQPMEEIVFKGDQGEKGPRGPPGPIGFPGPSDLPGAPGEKGEKGVIGFPGDRG
YPGREGLPGVSGRKGQRGSSGRPGQDGHPGREGDTGEPGPAGAPGPILCDSPRGDPGRQG
LRGEIGGLGLPGYPGQLGRPGEAGAGFPGLAGFPGVDGPKGEKGLKGNEECPIPEGIPGP
QGPRGLVGPPGPRGAKGSPGFICEVPGPPGLPGPKGNQGPPGQHGMHGLKGDPGDCAHIQ
DTPGTPGNSGIPGIPGNPGNPGRKGEQGDHGAPGSAGLPGPAGSPGRDGFPGAKGQKGIS
TQRAKKGEKGNQGDPGGRGAPGRPGQPGRHGNAGPIGRPGVPGDAKHGTPGDNGLRGLPG
RSAIPGPPGPPGLGYPGPKGQTGRVGDIGFSGEQGSKGQKGLKGDTSCPRRPGPSGPKGL
PGPPGSKGSPGIYGRPGKIGFDGPKGLKGEPGLMTYPGESGFQGSIGDPGRQGPPGASEN
GAPGSPGFSGIPGEKGPPGDSYDGPSGAPGQFGRRGPTGASGDTGSPGPPGRQGRNGVPG
FPGSKGFQGDRGLTGQPGNPGPPGFPAEKGESGPIGPPGRPGLHGPQGISLKGFLGNPGP
LGPTGLKGVQGIPGNPGIPGSIGMQGQPGPVGNGGTPGFPGPIGRKGSQGIRGFLGAPGP
QGLPGIPGQPGLRGDEGIKGPVGERGIKGSNGERGDPGEDTLTPIVYEKGSWGISGFPGE
DGFTGPRGEKALPGNPGIPGFPGRPGFPGSEKGFPGMNGPPGQPGRQGLIGHRGQKGIIG
FPGIKGEKGDSGQLGSPGTPGEPGCKGSKGDIGDSRSLQGFPGTKGQIGDPGEPGVNGFP
GQPGPAGFDGRSGAPGIKGIHGAPGVPGFPGYQGPPGDSGRPGPIGLPGIQGKPGSVGPP
GPQGSKGQPGSPGLHGLNGLQGQKGTLGSPGLSEPGPMGSPGSPGPKGVKGSPGPSGSPG
RCPTGRVGDRGPEGPPGPRGPAGPPGLRGPPCDFISVGPPGDQGPPGFDGPPGPHGFPGD
PGIPSTPLQGDPGDPGVSGRTGAQGPPGERGGCGLNGPPGPPGRKGEMGDQGFTGFPGLD
GPMGFPGDRGERGCAGSPGPKGDPGPPGTVILGNGIDIRLYKGDPGPPGHSGRTGSPGKM
GFSGSRGLPGPKGRKGEHGRPGTDGSPGQLGPPGNVGIPGQQGITGDQGPPGPQGPPGNP
GLCPPFSAGFLIVVHSQSQEVPTCPQNMHSLWQGYSLLYLEGQEKSHNQDLGLAGSCLPM
FSTMPFAYCSIDEVCHYATRNDKSYWLSTTAPVPMMPLIEQEIEPYISRCSVCEAPSVAV
AVHSQDQTIPPCPSGWVSLWTGYSFLMHTGAGAEGSGQSLSSPGSCLEDFRSTPFIECQG
ARGTCHYFTDKYSFWLTTVQPSHQFGLPAPSETLKIEHLQRQRVSRCQVCLKR
NT seq
5022 nt
NT seq
+upstream
nt +downstream
nt
atggcgccaagcggattcagatgtcccgtccggatggtccccttcagcctttggttgctg
ctgctccaattctccttgctctgcggagctcacgcgggtcagatcgactacaccggtccc
tgtggcggaagggattgttcggtttgccagtgttttccagctaaaggcgcccagggccag
ccaggctcattgggaagacatggcccacaaggttcctccggccttcaaggaccacgaggc
ccaccaggattaaaaggacagaacggagatcgtggatcacctggatttgctggaataaaa
ggggatagaggtccgactggtgttcctggctttctaggattggatggcattccaggtttt
ccaggactgcaaggtgcacggggacctcctgggctggatggctgcaatggatctcgagga
gaccctggcctccctggaagtgaagggtttccaggaagacctggtttaccgggaatgcaa
gggccaaaagggccaaaaggagattccataactgctacattttcttataggggtttaccg
ggagatcaaggattcccagggccaataggctatcctggtcttccaggaattgcaggtctt
cgaggtattgaaggacagagaggtccacctggttttcaaggacatcctggttcacaaggc
ttaccaggcgaccagggcatgggatttccaggccaaaaaggcgagaagggtgaacaaggt
gacccaggacatgtcgaactcaaccagcccatggaagaaattgtctttaaaggagatcag
ggtgagaaaggccctcgagggcctcctgggcctattggatttcctggaccttcagatctc
cccggtgcccctggtgaaaagggtgaaaagggggtcattggtttccctggggatcggggt
tatcctggacgggaaggcttgccaggtgtttcaggaagaaagggacaacgtgggtccagt
ggtagacctggacaagatggccatccagggagagagggggacacaggagagccaggacct
gctggagcaccaggacctatattgtgtgactctccgagaggagacccaggtaggcaaggt
ttacgaggcgagataggaggactaggactgccaggataccccggtcaactcggcagacca
ggtgaagctggagcaggttttccaggtctggcagggtttccaggtgtagatggtcctaaa
ggagaaaaaggactgaaaggaaatgaagaatgtccaataccagagggaatccctggccct
caaggcccccgaggcttagtaggacccccaggtccccgtggcgcaaagggcagcccaggt
tttatttgtgaagtaccgggtcctccagggctgccaggtcccaagggtaaccaaggacct
ccaggtcaacacggaatgcatggtttaaaaggagatccaggggattgtgcacacatccag
gacactccaggaaccccaggaaattcaggaattccaggcattccaggaaatcctggaaat
ccaggaagaaagggagagcagggtgaccatggagcgcctggatcagccggattgccagga
cctgctggatctcctggaagggatggttttccaggtgcaaagggccagaaaggaatatca
actcagcgtgcaaagaaaggagagaaaggaaatcaaggtgatccaggaggtcgaggtgca
cctggaagaccgggacaacctggccgacatggaaatgcaggccccataggccgacctgga
gtcccaggtgatgcaaagcatggaactccaggagacaatggcctacggggtcttccagga
cgttcggccattccaggaccccctgggcccccaggtctgggttatcctggtccaaaaggc
caaaccggccgtgtgggagatataggcttttcaggagagcaaggttctaaaggccaaaaa
ggcctaaaaggtgacacttcctgtccaagacgcccaggcccatcaggccctaaaggattg
ccagggccaccaggatcaaaaggttctccagggatttatggcagaccagggaaaattggc
ttcgacgggccgaaaggcctgaaaggtgaaccgggcctgatgacatatcctggagagtca
ggttttcaaggatcaattggtgacccaggtcgtcaagggcctcctggagcttcagaaaac
ggagctcctggctctccaggcttttcgggtattccaggagaaaaaggtccacctggcgat
tcatacgatggtccatcaggggctcctggacaatttggcaggagaggcccaacaggtgca
agtggagatactgggagtccaggacctccaggaaggcaagggcgcaatggagttccggga
ttcccaggaagtaaaggattccaaggtgatcgaggcctgactggtcaaccagggaatcct
ggtccaccaggtttccctgcggagaaaggagaatcaggtccaattggacctccaggacgt
ccgggtttacatggcccccaaggtatatctctgaaaggatttttaggaaatccaggtccc
ttaggcccaacagggttaaagggagttcaaggaattcctggaaatccgggaatacctggt
tcaattggcatgcaaggccagccaggtcctgtgggaaacggcggaacaccaggatttcct
ggtccaataggcagaaaagggagccaaggtattcggggatttctaggagcaccaggtcca
caaggacttccaggaattcctggacaaccaggactacgaggagatgagggaataaaaggc
ccggttggagaaagagggattaaaggaagcaatggggaacgaggggacccaggggaagac
acgcttactccgatcgtttatgaaaaaggcagttggggaatctccgggtttcctggtgaa
gatggatttacaggtccacgtggtgaaaaggcattgcccgggaatccaggaatccctgga
tttcccggcaggcctggttttccaggctctgagaaaggttttcctgggatgaatggacca
ccgggtcaaccagggagacaagggttaattggacatagaggccaaaaaggtatcattgga
tttcctggaattaagggggagaagggtgacagcggacaattgggatctcctggaacacca
ggtgaacctggttgtaaaggatcgaaaggtgacataggcgattctcgtagtttgcaagga
ttccctggaactaaaggacagattggtgacccaggcgagccaggtgtcaatggtttccca
ggccagcctggtcccgctggttttgatggaaggtcaggcgcacccggaataaagggaatc
catggtgctccaggggttccaggtttcccagggtatcaaggacctccaggagattcagga
cgcccaggaccaataggattacccggtatccaaggaaaaccaggatctgtgggacctcct
ggcccgcaaggttccaaaggtcaacctggatcacctggtttacatggactaaatggattg
caaggacaaaaaggaactcttggatctccaggactgagtgaacctggacctatgggatca
ccaggatcacctggaccaaaaggtgtaaagggttccccaggaccttcaggaagcccaggt
cgatgcccaacgggtagagtaggagatcgaggaccagaaggacctccaggtccacgtggg
ccagcaggacctccaggtttaagaggaccaccttgcgattttatctcagttggaccaccg
ggagatcaaggtccaccaggttttgatggtccaccaggtcctcatggttttcctggtgac
ccagggattccctccacaccacttcaaggggatccgggagatccaggagtatcaggtaga
actggcgctcaaggtccaccaggagagcggggcggatgcggcttaaatggtcctccaggg
ccaccaggtcgaaaaggtgaaatgggtgaccagggcttcacgggatttcctggacttgat
ggaccaatgggctttccgggtgaccgaggtgaacgtggttgtgctggctcaccagggcct
aaaggcgatccaggcccacctggtacagttatcctgggcaatggaattgatatacgtctt
tataaaggagatccggggccaccaggacactccggtcgtacaggatcaccaggaaaaatg
ggattttctgggtcacgtggccttccaggccccaaaggacggaaaggagaacatggacgg
ccaggtactgatggttcacctggtcaacttgggccgccaggaaatgtcggcattcctggg
caacagggaatcactggggaccaaggccctcctggaccacaaggcccaccaggaaatcca
ggcctgtgccctccattctctgctggcttcttgattgtggtgcatagtcagtcacaggaa
gtacctacatgtcctcaaaacatgcatagcctttggcaagggtacagtttgctttatctg
gaaggacaagaaaagtctcacaatcaagatcttggtctagctggctcttgtctgccaatg
ttcagtactatgccatttgcatattgcagcattgatgaagtttgtcactacgccactaga
aatgacaaatcgtactggctgtctaccaccgcaccagtccccatgatgcccctcattgag
caagagatcgaaccttatatcagcaggtgttcagtctgcgaagcgccttctgttgctgtt
gctgtacacagccaggaccagaccatccctccttgcccttcagggtgggtcagcctttgg
actggttactcctttttgatgcacacaggagctggtgccgaaggaagtggtcagtctcta
tcgtcacctggcagctgcctggaggatttccgctcaacaccatttatcgagtgccaagga
gcgcgtggcacctgccactattttaccgataaatacagcttttggctgacaactgtgcaa
ccgagccaccagtttggactaccggctccgtcagaaactttgaaaatcgagcatttacag
agacaaagagttagtagatgtcaggtttgtctgaaaagataa
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integrated database retrieval system
