Scyliorhinus canicula (smaller spotted catshark): 119976751
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Entry
119976751 CDS
T11175
Symbol
skic2
Name
(RefSeq) superkiller complex protein 2
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Pathway
scau03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119976751 (skic2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scau03019
]
119976751 (skic2)
Enzymes [BR:
scau01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
119976751 (skic2)
Messenger RNA biogenesis [BR:
scau03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
119976751 (skic2)
mRNA degradation factors
3'-5' decay
Ski complex
119976751 (skic2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
DEAD
MTR4_beta-barrel
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
DUF3516
DUF2666
ATPase_2
Ski2_beta-barrel
Motif
Other DBs
NCBI-GeneID:
119976751
NCBI-ProteinID:
XP_038673415
LinkDB
All DBs
Position
13:12533624..12610876
Genome browser
AA seq
1247 aa
AA seq
DB search
MEQERLEMPPKDPDDLPLSILEVGCSGKFELITQPATKNGYIFPLATLPHGLPPYALDLI
TEAEQHFLSDPSKLPLHHFENSQKVWPREVCVDSLYHIDVTPVHSTLKVERNQTTGELLG
YKEVCLDDTGLSIKNSLSLQRPPGPPNQSVRGSSTNYPFWPGGMDEPNLDMIKSMGDFEE
SIDFEKDLLTVPPGWKKGLNFKKTEHKVAPGLLSLTNLIGAMDDFNLGGSSDEEDEKKRK
TAEAKQPLPRTNSLEDLVLQELKVTSQPKLSEKKEAGSVLEKEQWAVPVDISTPVDDFYK
RIQDPAFKWPFEPDVFQKQAILRLETHDSVFVAAHTSAGKTVVAEYAIALSQKHMTRTIY
TSPIKALSNQKFRDFKNTFKDVGLLTGDVQLHPEASCLIMTTEILRSMLYNGSDAIRDLE
WVIFDEVHYVNDAERGVVWEEVLIMLPDHVNLILLSATVPNTLEFADWIGRIKQKKIYVI
STMKRPVPLEHHLYTGNSQKTQNELFLLVDAQGNFLTKGYYAAVEAKKERASKHSQSFGA
KQPVHYGGPSQDKSVWLSLIDMLRKKDSLPIVAFTFSRNRCDENANMLTTVDLTSTVEKS
EIHIFFQKCISRLKGTDRELPQVRQMVELLKRGIGVHHSGILPILKEVIEMLFTRGLVKI
LFATETFAMGVNMPARTVVFDTIRKHDGTNFRDLTPGEYIQMAGRAGRRGLDTTGMVIIL
CKAGVHEMSDLHKMMLGKPTHLQSQFRLTYTMILNLLRVEALRVEDMMKRSFSEFHTRKD
VKIHEQQIQELTKKLSNMEEVECIGQLSDLEHYYNTVRELLYTRDALQKRIMESTSGFKA
LSVGRVLVVKTQRHKNALGVILQVSTDSTNRTFTTLVLSEFRQEETEKEVEALPVAPTPD
QLLTNKLFLPEGPCGHTVEKLTTKQIGSATVKTVRINADKIIDDFKKRQIPRFRNDPPGP
SVTTATQELLRLAESHPDGIAGLDPINDLQLKDLDLVDGYTRARRLENSLSKFTCFHSPR
FSTEYARMQERMMIKDELDRLRFLVSDRSLMLLPDYEQRVNVLKALKYIDESCAVQLKGR
VACEISNHELIVTEMVFENVLTDLHPEEIVALLSCLVFQQKTQVEPELNEVLRKGIERIR
GVAERIATLQRECSLQESIEDFVDQFKFGLVEVVYEWAKGLPFAEITRLTDVQEGIIVRC
IQRLNETCRDVRNAARIIGDPTLNAKMEQASNLIKRDIVFAASLYTQ
NT seq
3744 nt
NT seq
+upstream
nt +downstream
nt
atggagcaggaaagacttgaaatgcctccgaaggatcccgatgaccttccactgtccatc
ttggaagtaggctgttcagggaagtttgaattaataacacagcctgctacgaagaatgga
tatatcttccctttggcaacacttccacatggcctgccaccgtatgccttggacctcatc
acggaggcagaacagcacttcctgtccgacccctcaaagcttcccctccatcacttcgaa
aactcccagaaggtctggcccagagaggtgtgtgtggattctttgtatcacatcgatgtc
accccagttcattcaacgctgaaagtggagaggaaccagaccacgggcgagttgctgggc
tacaaagaggtatgtctggatgatacaggattgtccataaagaactccctctctctgcag
cgaccgcctggacccccgaaccaatctgtaagaggcagttccactaattacccattctgg
ccagggggcatggatgaaccaaatttggatatgattaagtcaatgggcgattttgaagaa
agcattgactttgaaaaggatttactgactgtgcctccaggttggaaaaaagggctgaat
ttcaaaaaaacagagcacaaggtggcccccggcttactgagcctcacaaaccttattggg
gcaatggatgacttcaacctcggaggatccagtgatgaagaggatgaaaagaaaaggaag
acagccgaagcaaagcagcctctccccagaaccaacagcttggaagacttggtgttacag
gagctgaaagtcacttctcagcccaagctgagtgaaaagaaggaggcagggtccgtcctt
gagaaggagcagtgggctgtcccagtcgacatcagcacccctgtggatgatttctacaag
cgaatccaggatccagctttcaagtggccctttgagccggacgtctttcagaagcaggca
atcctacgcctcgaaactcatgactcggtgtttgtggcagcccacacatcagctggcaag
accgtcgtcgctgagtacgcaatcgcactttcgcagaaacacatgaccaggacaatctac
acgtcgcccattaaggcactgtccaaccagaaattcagggatttcaaaaacacatttaaa
gatgttggtctcctgactggagacgtccagttacatccggaagcttcctgcctcataatg
acgacagaaattctcaggtccatgttatacaatggctcggatgctattcgtgatcttgaa
tgggtgatatttgatgaggttcactatgtcaacgatgccgagaggggagttgtatgggag
gaagtgctgatcatgcttccggaccatgtgaacctcatccttctgagtgccaccgttccc
aacaccctggagtttgccgactggatcgggaggataaagcagaagaagatttatgtgatc
agcaccatgaagcggccagtgcccctggagcaccatctgtacacgggcaacagccagaag
acacaaaatgaactcttcctactggtcgatgctcagggaaacttcctcaccaaagggtac
tacgcagcggtggaagccaagaaggaacgtgccagcaagcactcgcagtcatttggagcc
aagcagccagtccactatggaggccccagccaggataaaagtgtgtggttatccttgatt
gacatgcttcggaagaaagacagccttcccatcgtggcattcaccttctcccggaaccgc
tgcgatgagaatgccaacatgctcacgaccgtcgacctcactagcaccgtggaaaagagc
gagatccacattttcttccaaaagtgcatctcccggttaaaaggcacggaccgtgagtta
ccacaggttcgtcagatggttgagctactgaaacgggggattggtgttcatcacagtggg
atccttccaatcctgaaggaggttattgagatgctttttaccaggggcctagtaaagatt
ctctttgcaacagagacgtttgcgatgggggtaaacatgccagccaggacagtggtgttc
gacacgatccgcaaacacgacgggacaaacttccgagatctaactccaggtgaatacatt
cagatggcaggcagagcagggaggagaggtctggacacgactgggatggtcattatcttg
tgtaaggccggggttcacgagatgtctgacctccacaagatgatgttgggtaaacccaca
catttacagtctcagttccgcctcacctacaccatgatcctcaacctcctgcgggtggag
gcactccgggtagaggacatgatgaagcgcagtttctcagagttccacactaggaaggat
gtcaagatacatgaacagcagattcaggaactgacaaagaagttgtcgaacatggaagag
gtggagtgcattggacagctgagtgacttggagcactattataatacagtgcgggagctc
ctatacacaagagacgctctacagaagaggatcatggagtcaacgagtggattcaaggcg
ctatccgtcggtcgagtcctggtggtcaaaacacaacgtcacaagaatgcactgggagtg
atcctacaggtttccacggattcaaccaaccgaacgttcaccactctggtcctctcggag
ttcaggcaagaagaaaccgagaaggaagttgaggcactacctgtggcaccgacgcctgat
cagctcctcaccaataaactcttcctaccagaaggaccctgcggacacacggtggagaaa
ctgaccaccaaacagatcggcagtgcgactgttaaaactgtgcgcatcaatgcggataaa
atcattgatgactttaagaagaggcagattcctcgcttcaggaatgacccacccggccca
tcagtcaccacggccactcaggagctcctgcggttggctgaatctcacccggatgggatt
gccggcttggaccccatcaatgacctgcagctgaaggatctggacctggtggacggctat
accagagcgagacgcctcgagaactccctcagcaagtttacctgttttcacagtcccaga
ttctccactgagtatgcacggatgcaggagcggatgatgattaaagatgagctggaccga
ctccgtttcctggtctcggaccggagtctcatgctgcttcctgactacgagcagagagtc
aacgtgctgaaggccctcaagtatatcgacgagagctgtgctgtgcagctgaagggccga
gtggcctgtgagatcagtaaccacgagctgattgtgacagagatggtgtttgagaatgtg
ctgacagacctgcacccagaggagattgtggctcttctctcctgtctagtcttccagcag
aaaacgcaggtggagccagaactcaatgaggttcttcgcaagggaatcgagcggatccgg
ggtgtcgcagagcggattgccactctgcagcgggagtgtagcctgcaggagtccatcgag
gattttgtggaccagtttaagtttggcttggtggaagtggtgtatgagtgggcgaagggc
ctgccctttgctgaaatcacgcggctcactgacgtccaggaaggaatcatcgtgcggtgc
atccagcggctcaacgagacatgtcgcgatgtgcgcaatgctgctcgcatcatcggggac
cccaccttaaacgccaaaatggagcaggcctcaaacctgatcaagagggacattgtgttc
gccgccagcctgtacacccagtga
DBGET
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