Scyliorhinus canicula (smaller spotted catshark): 119977334
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Entry
119977334 CDS
T11175
Name
(RefSeq) collagen alpha-1(IV) chain-like isoform X1
KO
K06237
collagen type IV alpha
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Pathway
scau04382
Cornified envelope formation
scau04510
Focal adhesion
scau04512
ECM-receptor interaction
scau04518
Integrin signaling
scau04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
119977334
04518 Integrin signaling
119977334
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
119977334
09142 Cell motility
04820 Cytoskeleton in muscle cells
119977334
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
119977334
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
scau04147
]
119977334
00536 Glycosaminoglycan binding proteins [BR:
scau00536
]
119977334
Exosome [BR:
scau04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
119977334
Glycosaminoglycan binding proteins [BR:
scau00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
119977334
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
119977334
NCBI-ProteinID:
XP_038674045
LinkDB
All DBs
Position
14:complement(158556780..158706645)
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AA seq
1612 aa
AA seq
DB search
MPGFPGVEGPTGSGGPKGDFGDPGLTGKKGIRGPAGSPGFPGTPGLPGLPGQDGPPGTAG
IPGCNGTKGELGPLGPPGLPGLQGSPGQSGIPGIKGDPGDVIGSSISKGERGFPGSPGIQ
GVSGNPGMKGPIGPRGYPGPSGPPGIPGTPGPKGNMGVQFYGPKGEKGESGIQGPPGPPG
AELTGGTTKILIGEKGLKGDQGESGLRGFPGSPGHSSVGMKGEKGELGEPGKRGKPGKDG
DPGLPGRDGQSGHPGEPGYSGQAGQKGDKGSRGIDGPPGVITDLHGNVIYGTQGEPGDPG
PPGLLGERGSPGPPGLAGVPGPTGHSLQGENGLPGFAGERGQKGDKGDAGSSLSGAPGRD
GQRGLPGSPGPPGPTVSRADCRSLPGLPGPAGPRGYQGESGLKGSKGGTCFHCNFTAFPG
PSGPQGPPGRTGDPGIPGPKGDQGAPGRAGFPGQPGADGLHGPRGIPGSKGEAGDIQTLP
GVKGDRGDPGFPGSPGVPGIGGLPGKEGPPGILGLKGEPGNIGFKGERGLSGTPGLSGIP
GDQGPPGSPGLGLPGFPGEKGSQGFPGSAGIPGEAGQKGESGNSVSQPGARGHPGPPGLP
GQPGSRGDPGLPGAPGLHGAIGPKGDPGPTGIGFPGPTGVKGASGIPGLPGPPGLAGRPG
NDGFPGQTGPPGEKGQAGLGLPGPRGFPGVPGLDGNRGAKGDPGLPGIPGSAGHVGPPGF
PGEKGNLGPVGLQGPPGLPGPAGTGLPGQPGKEGPQGPPGLQGLQGSSGVKGDPGFPGLD
IPGPQGEKGRHGPQGLPGSPGYPGQIGSPGKDGPPGLQGSKGEMGVMGTPGSQGFPGPSG
NAGYTGPKGVQGLPGFPGPSGASGEKGDKGEVGLVGKPGVMDKLEMEKMKGQKGEIGDPG
HSGLPGSKGHQGVTGDTGLPGKDGQPGLPGQPGLAGDPGRPGKPGLTGVAGEKGSIGEMG
LPGTSGFQGLPGEPGQTGIPGYSGQPGVKGDKGNPGVPGFGVPGSPGPKGDSGLTGFPGD
PGPTGEPGVPGLPGSLGSTGPKGSPGVSGIPGNPGLPGIKGSLGPPGESGFSGIPGQPGP
SGPQGIAGILGEKGSRGHDGIPGVIGEKGNQGLPGRDIPGSPGLPGTKGLKGDLGLPGYP
GSPGVPGVKGERGFSGAKGHQGIQGSPGPPNVALEGPKGEKGNVGEAGRSGSPGVQGSPG
APGLSGAIGEKGNKGLPGPSGFSGFKGEKGIQGSPGNAGYPGTPGQKGESGSHGVPGFIG
SKGASGLPGFPGSQGERGPLGQPGPAGPMGPQGPLQIIKGDPGLAGQPGKDGTKGYPGFP
GVKGDLGPTGRVGDPGEQGAPGFDGAHGLKGELGLTGPGGPRGYPGPAGPEGAPGPRGYP
GPASIAHGFLVTRHSQMAEVPTCPHGTSQIYDGFSLLYVQGNERAHGQDLGTAGSCLRRF
STMPFLFCNINNVCNFASRNDYSYWLATPEPMPMSMAPVTGQSIEPFISRCSVCEAPAMV
IAVHSQTIQIPLCPNGWHSLWIGYSFMMHTSSGAEGSGQALSSPGSCLESFRTAPFIECH
GRGTCNYYANSYSFWLATVETSEMFRKPESETLKAGELRTRISRCQVCMKKT
NT seq
4839 nt
NT seq
+upstream
nt +downstream
nt
atgccaggatttcccggcgttgagggacctactggctctgggggaccaaagggtgacttt
ggggatccaggtttaacaggaaaaaaaggaatccggggtcccgctggttcacccggattc
ccagggacccccggattaccagggttgcctggacaagatggcccaccaggtacagcagga
atcccaggttgtaacggtacaaagggtgaacttggacctctgggacctcccggattgcca
ggtttacaaggatctccaggacaatccggcattcctgggataaagggagacccaggagat
gtcattgggtcttcaatatcgaagggggagcgaggtttcccaggatcaccaggaatacag
ggtgtatcagggaatcctggaatgaaaggacccatcggcccaagaggatatcctggacct
tcaggtcctccaggtatccctggcactccaggaccaaagggaaacatgggggtgcagttc
tatggaccaaagggtgagaagggtgagtcaggaatccaaggacccccaggtccacctggt
gcagagctgacaggaggaacgacaaaaatcctgatcggagagaagggtctgaagggagat
caaggggaatccggattgcgagggttcccgggaagccctggacactccagtgtcgggatg
aaaggcgagaaaggagaattgggcgagccgggtaaacgtgggaaacctgggaaagatgga
gatcctggactcccaggacgtgatggccaatcaggtcacccaggagaaccagggtattcg
ggacaggcgggccagaagggagataaaggcagtcgtgggattgatggtcctccaggcgtt
attactgatttacacggaaatgttatttacgggacacagggagagccaggtgacccaggc
cctcccgggttgctaggcgaacgaggcagcccaggccccccaggacttgctggagtaccc
ggccctacaggtcattccctacagggtgagaatggcctgccagggttcgctggtgagcga
ggtcagaaaggcgacaaaggagatgcaggatcatcgctctcaggagctccagggagagac
ggtcagagaggattaccaggttcccctggtcccccaggacccacagtatcccgtgcggat
tgtcgaagtttaccggggctgcctggaccagccggacctcggggttaccaaggggaatct
ggattgaaaggcagcaagggtggtacctgcttccactgtaacttcaccgcctttcctggg
ccatccggaccccaaggccctccgggaagaacaggtgatcccggaattccaggtccgaag
ggagaccagggtgcgccaggaagagccggattccccggccagcctggcgctgatgggttg
catggacccagaggaattccaggctcgaaaggtgaggcaggagatatccaaactttacct
ggagtgaaaggagatcgaggtgaccctggattcccgggttctccgggtgttcctggtatt
ggtggattacctgggaaagaaggtcctccaggaatcctaggattgaaaggcgagccagga
aacattggcttcaaaggtgaacggggtttatcaggaaccccaggattatcgggaatacca
ggagatcagggacctcccggatctccaggactgggcttgcctggatttccaggtgaaaag
ggcagccaaggatttccaggaagtgcgggaattcctggtgaagcaggtcagaaaggggaa
tcaggaaactctgtcagtcagccaggagcccgaggtcaccctgggcctccaggattacca
ggccagcctggaagtagaggtgatcccggtctcccgggagctccaggattacacggagca
atcggcccaaaaggtgatcccggtcccaccgggatcggcttcccaggaccaactggtgta
aaaggtgcctctggaattccgggtctgccaggtcctcctggtctggctgggcgtccgggg
aatgatggctttcccggccagactggacccccaggagaaaagggacaagcgggactgggt
ctcccaggaccccgaggatttccaggtgtcccaggactggatggaaatcgaggagctaaa
ggtgacccaggactgcctggcattcctggatcagcaggacatgttggaccacctggattc
ccaggtgaaaaaggcaaccttggtccagtgggtttacagggcccaccaggactccccgga
ccagcaggcacagggcttccaggtcaacccggcaaagaaggaccccaaggaccacccggc
ctccaaggactccaaggatcgtcaggagtgaagggtgaccctggttttccagggttagac
ataccagggccgcagggggagaaggggagacatggaccccaaggccttcctggttctcca
ggttacccagggcaaattggatccccaggaaaagatggtcctccaggcttacaaggttcc
aaaggagaaatgggcgtcatggggactcctggaagccaaggatttccgggtccttcaggg
aatgccggatataccggtccaaaaggtgtgcagggtttgcctggtttcccaggacccagt
ggagcatcaggtgagaagggggacaaaggggaagttggtcttgtggggaaacctggagtg
atggacaaacttgagatggagaaaatgaaagggcagaaaggagaaatcggagatccagga
cattcaggtttacctggatcaaagggccatcaaggtgttacaggtgacacaggattgcca
ggaaaagatggtcaacccggattgccaggacaaccaggattggcaggagacccaggaaga
ccgggaaaaccaggactgacaggtgtcgcaggagagaaaggatcaattggagaaatggga
ctaccaggtacctcagggttccagggtctcccgggtgagccaggccaaactggaatacca
ggttacagtggacagcccggtgtgaaaggcgacaagggaaacccgggggtgccaggcttt
ggagttccaggtagtccaggtccaaagggggattcgggtctaactggctttccaggtgac
cctgggccaacaggtgagccaggtgtgccaggtttgccaggatcactgggatcaacggga
ccaaagggaagcccaggtgtgtcggggattccaggtaacccagggcttccgggaattaaa
ggcagcttgggcccaccaggtgaatcaggtttctcaggaatcccaggacaaccaggtccc
agtggcccccaaggtatcgcaggaatcctgggcgagaaaggctcaagaggccatgatgga
atcccaggagtgattggtgaaaagggtaatcaaggcctcccgggaagagatatcccagga
tcgccaggattgccgggaaccaagggtttgaaaggtgaccttgggttaccagggtacccc
ggttcgcctggcgtcccaggtgttaaaggagagcgagggttctcaggcgccaaaggtcac
cagggcattcaaggttccccaggacccccgaacgtggccttggagggaccaaaaggtgaa
aaaggaaatgtgggtgaagcaggccgctcggggagccccggtgtccaaggaagccctgga
gctccaggactgagtggagccatcggagaaaaaggaaataagggactcccagggccctct
ggcttttcaggattcaagggagagaaaggaatccaaggatctcctggcaatgctggctat
ccaggtactcctggtcagaagggcgaatccggatctcatggagttccaggcttcattgga
tccaagggtgcatcaggattgcctggatttcccggctcacagggtgagagagggcctctg
ggacaaccaggtccagctggtcccatgggtccacagggccctcttcagatcatcaaggga
gatcctggtttggcaggtcagccaggcaaagacggaaccaagggatatcctggctttcca
ggcgttaaaggtgacctaggtccaaccggccgagttggagatccaggtgaacagggggct
cctggatttgatggtgcacatggactgaaaggagagcttggcctaactggtccaggaggt
ccaaggggttatccagggcctgcaggccccgaaggagcgccgggtcctcgaggatatcct
ggccctgcttccatagctcacggctttcttgtgacccgacacagccaaatggccgaggtg
cccacctgtccccacgggacatcgcagatctatgatggcttctcactgctttatgtccaa
ggcaatgaaagggctcatggccaagacctgggcactgccggcagttgtttgcggcgattc
agtaccatgcccttcctcttctgtaatatcaacaatgtctgcaactttgcatcaagaaac
gactattcctattggctggccacacctgaaccaatgccaatgagtatggctcccgtcact
ggtcagtctatcgagccatttatcagcagatgctccgtttgtgaagctccagcgatggta
atcgctgttcacagccaaaccattcaaatcccactgtgccccaatggctggcattccctc
tggatcggctattccttcatgatgcacaccagttccggagctgagggatcaggacaagct
ctatcatctcccggttcttgcctggaatcattccgtacggctcctttcattgagtgccat
ggccgaggaacctgcaattactacgcaaactcttacagcttctggctcgcaactgtggag
acctcagagatgttcaggaaaccagaatcggagacactgaaggcgggcgagcttcgcact
cgcatcagccgctgccaagtttgtatgaagaagacgtaa
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integrated database retrieval system
