Scyliorhinus canicula (smaller spotted catshark): 119977407
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Entry
119977407 CDS
T11175
Name
(RefSeq) protocadherin-9 isoform X1
KO
K16498
protocadherin delta 1
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Pathway
scau03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
119977407
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
scau01009
]
119977407
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
scau04515
]
119977407
Protein phosphatases and associated proteins [BR:
scau01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
119977407
Cell adhesion molecules [BR:
scau04515
]
Cadherins
Protocadherins
119977407
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_CELSR2_9th
Cadherin_2
DUF6377
MAP17
Baculo_11_kDa
Cadherin_4
EphA2_TM
Motif
Other DBs
NCBI-GeneID:
119977407
NCBI-ProteinID:
XP_038674193
LinkDB
All DBs
Position
14:150228532..151038476
Genome browser
AA seq
1427 aa
AA seq
DB search
MMDLRDFYLFFALAACLTLDSALAQELVYTIQEELPENVLVGSIPEDLSPSHLASGSGAN
LIYRLVSKAGEVPLLRVSSSTGDIFTTSSRVDRERLCSGTYTDSECFFEIEVVVLPNDHF
RLIKVKIFVRDVNDNAPMFPSPVINISIPENTLSNSRFPIPSATDPDTGSNGVQHYQLLN
GQGILGLDMVETPEGEKWPQLIVQQSLDREQKDTYVMKIKVQDGGSPQKSSTAILQITIS
DVNDNKPVFRESQLEAHIPEDAPLGTSVIQLHATDADVGSNAEIRYLFSPQTPPAVRRHF
ALNSTLGLITVQRPLDREETAIHKMTILATDGSSSPARAMVIINVTDVNDNPPGIDIRYI
ISPINGTVYLSEKDPINTKIALITVSDKDTDVNGKVVCYIEKEVPFHLKAVYDNQYLLET
SAFLDYEGTKEYSFRIVASDSGKPSLNQSALVKVKLEDENDNPPVFSQPVIELSVPENNH
RGLYLTTISATDDDSGKNAEIVYQLGPNASFFDLDRKTGVLTASRVFDREEQERYIFTVT
ARDSGNPPLQSQAAVIVTVLDENDNNPRFTHNHFQFFVSENLPKYSTVGVITVTDMDAGE
NAEVMASVVGDNANFILDPLSGVIRSNVSFDREQQSSYTFEVKAVDRGRPARTSIAKVTI
NVIDVNDNSPVVIFPPSNSSFKLVPLSAIPGSVVAEVFAVDVDTGMNAELKYTIVSGNSK
GLFRIDPVTGNITLEEKPTVTDQGLHRLVVNISDLGYPKPLHTLVLVYLYVNDTVSNASY
IYELIRRTMETPLDKNIGDSTQPWQNEDYLTIMIAIVAGAMVVIVVIFVTVLVRCRQSSR
FKATQRNKQGAEWMSPNQECKQNKKKKRKKRKSPKSSLLNFVTIEESKPDDPAHEPINGT
ITLPAELEEQTIGRFDWGSTPPTTFKPSSPDLARHYKSGSPQPSFHLKPDTPISAKKHHV
IQELPLDNTFVGGCDTLSKRSSTSSDHFSASECSSQGGFKTKGPMHTRQVGWLVCSRPHL
TTHSGKKKSQRRVTFHLPDGSQESCSDSGLGEHEPVSGGTLISHPLPLVQPQDEFYEQAS
PDKRTEADGNSDPNSMFMSSSSHNLYRVSTGGKQTEMVATVAKLRKVKFSTVAMQVLVKQ
FTRLQRIYLATKPKMPTSEGHRRGGNLIAAKADISSKVARTAEDCRKRINDLRLGARQKV
AFNKKRGTVQHTDVAKEQVLTWEEEKVAPVVHLVERGPDASSDSSDSDECSKLLRSEQQQ
TTVILEEEKVSIQRQGPAVAMESAESDKVQQDSCGGRKEDFAGDVPLGSRGLAEASEMCT
QECLVLGHSDNCWMPPGLGTYQQLKSPLATFGSQKEWIRKDKLVNGHALSRAWKEDGNRN
HFNDRKLISGNEGHYTSGSQMTDIPLASLKSYKHTPASMESPKEHQL
NT seq
4284 nt
NT seq
+upstream
nt +downstream
nt
atgatggacctgcgggatttttacctgtttttcgcgctggccgcctgcctgaccctggat
tcggctctggcccaggagctggtgtacaccatccaggaggagctgcccgagaacgtgctg
gtgggcagcatccccgaggacctgagcccctcgcacctggccagcggctcgggggccaac
ctgatctaccggctggtctccaaggcgggcgaggtgcccctgctgcgggtgtcgagcagc
accggggacatcttcaccacctccagccgggtggaccgggagcgcctgtgctcgggcacc
tacaccgacagcgagtgcttcttcgagatcgaggtggtggtgctgcccaacgaccacttc
aggctgatcaaggtcaagattttcgtgcgggacgtgaacgacaacgcgcccatgttcccc
tcgcccgtcatcaacatctccatcccggagaacaccctgagcaacagccgcttccccatc
ccctcggccaccgacccggacaccggctccaacggggtgcagcactaccagctgctcaat
ggccagggcatcctgggcttggacatggtggagaccccggagggtgagaagtggccccag
ctgatcgtgcagcagagcctggaccgcgagcagaaggacacctacgtgatgaagatcaag
gtgcaggatgggggcagccctcagaaatccagcactgccatcctgcagatcaccatcagc
gacgtgaacgacaacaagccggtgttcagggagagccagctggaggcgcacatccctgag
gatgcccccctgggcacctcggtcatccagctgcatgccaccgacgccgacgtgggctcc
aatgccgagatccgctacctcttcagcccccagaccccaccggccgtccgcaggcacttt
gccctcaacagcaccctggggctcatcaccgtgcagcggcccctggaccgggaggagacg
gccatccacaaaatgaccatcctggccaccgacggcagctccagtcctgccagggccatg
gtcatcatcaatgtcaccgatgtcaatgacaacccgcctggcatcgacattcgctacatc
atcagccccatcaatggcactgtttacctgtccgagaaggaccccatcaacaccaagata
gcactgatcactgtttccgacaaggacactgacgtgaatgggaaagtggtctgctacatt
gagaaagaagtgcccttccacctgaaggcagtgtatgacaaccaatatctactggagacc
tctgccttcctggactatgagggcacgaaagagtacagcttcaggattgtggcctcagac
tcgggcaagcccagtttgaaccaaagcgctctggtgaaggtgaagttggaagatgaaaac
gacaacccgccggtatttagccagcccgtcatcgagctctcggtcccggaaaacaaccac
cgcggcctctacttgaccaccatcagcgctaccgacgatgacagcggcaagaatgccgag
attgtttaccagctggggcccaatgcgtctttctttgacttggatcgcaagactggggtg
ctgaccgcttcgagagtgttcgaccgggaggaacaagaacgttacattttcacggtgact
gccagggacagtggcaaccctccgcttcagagccaagcggcagtgatcgtcacggtgctg
gacgagaatgacaataatcccagattcacccacaaccacttccaattttttgtgtcggaa
aatctgccaaagtacagcactgtgggagtgattaccgtcaccgatatggatgctggggag
aacgcggaggtgatggcttctgttgttggcgacaacgctaattttattttagacccactg
agtggtgtaataaggtccaatgtctccttcgacagggagcagcaaagctcctacaccttt
gaagtcaaagctgtggacaggggcagacccgcccgcacctccattgccaaagtcacaatc
aatgtcatagatgtcaatgataacagtccagttgtcatcttcccaccctcaaactcttca
ttcaaactagtacctctttctgctatccctgggtcagtcgtggcagaagtgtttgcagtg
gatgttgacactgggatgaatgcagagctcaaatacaccattgttagtgggaatagcaag
ggtttgtttcgaattgaccctgtgacgggtaatattaccttggaggagaagccaactgtt
acagaccagggcttgcatcgtttggtggtcaacatcagcgatttaggctaccctaaaccc
ttgcatacccttgttcttgtctacctgtatgtaaatgacactgtaagcaatgctagttac
atttacgagttaatacggaggacaatggagactcccctagataagaacattggagatagc
acccagccctggcaaaatgaggactaccttacaataatgattgccatagtggcgggcgct
atggtggtgattgtggtcatcttcgttactgtgttggtgcggtgccgccaatcctcgagg
ttcaaagcgacacaaaggaacaagcagggcgctgaatggatgtctcccaatcaggagtgc
aagcagaacaaaaagaagaaaaggaagaaaagaaagtctccaaagagttctcttctaaac
tttgttaccatcgaggagtccaaacctgatgatcctgcccacgaacccatcaatgggacc
attacccttccagctgagttggaggagcagactatagggcggttcgactggggcagtaca
ccaccgactacctttaaacccagcagcccagacctcgcgaggcattacaaatctggctct
ccacagccctcctttcatctaaagccagatacccccatttctgcgaaaaagcatcacgtg
attcaggagctccctctggacaacaccttcgttgggggttgtgacaccctgtcgaagcgc
tcttccacgagttcagaccacttcagtgcctcagagtgtagctcccaaggaggcttcaag
acaaagggcccaatgcacaccagacaggttggttggttggtatgcagtcgcccacattta
acaacacactcgggcaagaaaaagtctcagcgccgggttacatttcatctgcccgacggc
tcccaggaaagctgcagtgatagtggtttaggagagcacgaaccagtaagtggtggcacg
ctgatctcacaccctctccctctggttcagccgcaggacgagttctacgagcaggcttcc
ccagacaagaggaccgaggccgacggcaactctgacccaaattctatgttcatgtcttca
tcatctcataacttgtacagagtctctacaggcggaaaacagacggaaatggtggccaca
gtagctaaactgcggaaggttaaattctccacggtggctatgcaagtgcttgtgaagcag
ttcacaagattacaaagaatatacctggccacgaaacctaaaatgcccactagtgagggt
caccgacgtggcgggaacctcattgctgcaaaagccgacataagttccaaagtagctcga
acagccgaggactgtcgaaagcgcatcaatgacttgagacttggcgctcgacaaaaagtc
gcttttaacaaaaagagaggtacagtccagcacacagatgtggcaaaagagcaagtcctg
acatgggaggaagaaaaagtggccccggtagtccaccttgtggaacgtggacctgatgcg
tcctctgactccagtgattctgacgaatgttcaaaactcttaagatcagaacagcagcaa
accactgtcatcttggaggaggagaaggtgtcaatccagcgtcaagggcctgcagtggcc
atggaaagtgcagagagcgacaaggtacaacaagattcatgtgggggacgtaaagaagac
tttgcaggtgacgtaccactcggctcaaggggactagctgaagcatcagagatgtgcact
caagaatgcttggtgctcggtcattcagacaactgctggatgcctccaggccttggcacc
tatcagcagctcaagtcccccctggctacctttggatctcagaaagaatggattaggaaa
gataagctagtgaacgggcatgcactgtcaagggcctggaaggaagatggtaacaggaac
cattttaacgaccgaaaactaatcagtggcaatgagggacattataccagtgggagccaa
atgacggacattcctttggctagtctgaagtcgtacaaacacacaccagcatccatggaa
tcgcctaaagaacatcagctatga
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